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01/457: guix: Upgrade to Bioconductor 3.16.
From: |
guix-commits |
Subject: |
01/457: guix: Upgrade to Bioconductor 3.16. |
Date: |
Thu, 24 Nov 2022 06:36:32 -0500 (EST) |
rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit f4a7ccc976a8974803ed4b0bfe72af0bd44a9773
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Nov 4 13:05:12 2022 +0100
guix: Upgrade to Bioconductor 3.16.
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
---
guix/build-system/r.scm | 2 +-
guix/import/cran.scm | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm
index 620822b870..9b360ae581 100644
--- a/guix/build-system/r.scm
+++ b/guix/build-system/r.scm
@@ -61,7 +61,7 @@ release corresponding to NAME and VERSION."
"/src/contrib/"
name "_" version ".tar.gz")
;; TODO: use %bioconductor-version from (guix import cran)
- (string-append "https://bioconductor.org/packages/3.15"
+ (string-append "https://bioconductor.org/packages/3.16"
type-url-part
"/src/contrib/"
name "_" version ".tar.gz"))))
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 278743d496..286a4c21b9 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -188,9 +188,9 @@ package definition."
(define %cran-canonical-url "https://cran.r-project.org/package=")
(define %bioconductor-url "https://bioconductor.org/packages/")
-;; The latest Bioconductor release is 3.15. Bioconductor packages should be
+;; The latest Bioconductor release is 3.16. Bioconductor packages should be
;; updated together.
-(define %bioconductor-version "3.15")
+(define %bioconductor-version "3.16")
(define* (bioconductor-packages-list-url #:optional type)
(string-append "https://bioconductor.org/packages/"
- branch wip-bioconductor created (now f43a41d196), guix-commits, 2022/11/24
- 03/457: gnu: r-ggplot2: Update to 3.4.0., guix-commits, 2022/11/24
- 01/457: guix: Upgrade to Bioconductor 3.16.,
guix-commits <=
- 04/457: gnu: r-ggprism: Update to 1.0.4., guix-commits, 2022/11/24
- 02/457: gnu: Add r-hdo-db., guix-commits, 2022/11/24
- 05/457: gnu: Add r-biocbaseutils., guix-commits, 2022/11/24
- 06/457: gnu: Add r-rorcid., guix-commits, 2022/11/24
- 07/457: gnu: Add r-gson., guix-commits, 2022/11/24
- 14/457: gnu: r-affixcan: Update to 1.16.0., guix-commits, 2022/11/24
- 08/457: gnu: r-abarray: Update to 1.66.0., guix-commits, 2022/11/24
- 09/457: gnu: r-absseq: Update to 1.52.0., guix-commits, 2022/11/24
- 10/457: gnu: r-adam: Update to 1.14.0., guix-commits, 2022/11/24
- 11/457: gnu: r-adamgui: Update to 1.14.0., guix-commits, 2022/11/24