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branch master updated: gnu: Add r-microbiome.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-microbiome. |
Date: |
Fri, 04 Nov 2022 10:32:31 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 04f8295f6f gnu: Add r-microbiome.
04f8295f6f is described below
commit 04f8295f6f91d8a5c75a212fc4b0a5174d89b996
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Sun Jun 19 22:42:00 2022 +0200
gnu: Add r-microbiome.
* gnu/packages/bioconductor.scm (r-microbiome): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb9feda347..f3b67fd2bf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9736,6 +9736,43 @@ to identify differentially methylated regions in
epigenetic epidemiology
studies.")
(license license:artistic2.0)))
+(define-public r-microbiome
+ (package
+ (name "r-microbiome")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "microbiome" version))
+ (sha256
+ (base32
+ "1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"))))
+ (properties `((upstream-name . "microbiome")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-compositions
+ r-dplyr
+ r-ggplot2
+ r-phyloseq
+ r-reshape2
+ r-rtsne
+ r-scales
+ r-tibble
+ r-tidyr
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://microbiome.github.io/microbiome/")
+ (synopsis "Tools for microbiome analysis")
+ (description
+ "This package facilitates phyloseq exploration and analysis of taxonomic
+profiling data. This package provides tools for the manipulation, statistical
+analysis, and visualization of taxonomic profiling data. In addition to
+targeted case-control studies, microbiome facilitates scalable exploration of
+population cohorts. This package supports the independent phyloseq data
+format and expands the available toolkit in order to facilitate the
+standardization of the analyses and the development of best practices.")
+ (license license:bsd-2)))
+
(define-public r-milor
(package
(name "r-milor")
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