branch master updated (9e589ca6e3 -> 8084e3bdb3)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 9e589ca6e3 gnu: rust-sprs-0.10: Inherit from rust-sprs-0.11.
     new 487fb5f624 gnu: Add r-confintr.
     new 71d87df8bf gnu: r-rintrojs: Update to 0.3.2.
     new e5e5b2a15a gnu: apache-arrow: Update to 9.0.0.
     new 851441a5d9 gnu: r-arrow: Update to 9.0.0.1.
     new 7531efe54d gnu: liblantern: Do not hardcode Python version.
     new 2b39d85ac4 gnu: liblantern: Update to 0.8.1.
     new 8e321254c0 gnu: r-torch: Do not hardcode Python version.
     new 921ac834db gnu: r-torch: Update to 0.8.1.
     new 7da529c577 gnu: r-dt: Update to 0.25.
     new 1e3d01dd05 gnu: r-httpuv: Update to 1.6.6.
     new 9c91113ee7 gnu: r-valr: Update to 0.6.5.
     new b1dd1f221f gnu: r-perfmeas: Update to 1.2.5.
     new 8f3787576c gnu: r-htscluster: Update to 2.0.10.
     new 93328f8b89 gnu: r-activedriverwgs: Update to 1.2.0.
     new 6e052e0b7c gnu: r-datawizard: Update to 0.6.0.
     new 5ba2bda97c gnu: r-dixontest: Update to 1.0.4.
     new ae4a57b967 gnu: r-googlesheets4: Update to 1.0.1.
     new 9878daa19d gnu: r-rticles: Update to 0.24.
     new af257e509d gnu: r-babelwhale: Update to 1.1.0.
     new 0fb5a1bd2f gnu: r-zoo: Update to 1.8-11.
     new 11669e8ee4 gnu: r-ggvenndiagram: Update to 1.2.2.
     new df7f9236ee gnu: r-ggpmisc: Update to 0.5.0.
     new 786c64fd82 gnu: r-scales: Update to 1.2.1.
     new 120dd1c0e2 gnu: r-poorman: Update to 0.2.6.
     new 4611b0676c gnu: r-astsa: Update to 1.16.
     new cd6b82cdd8 gnu: r-rvest: Update to 1.0.3.
     new b09ba421ef gnu: r-reprex: Update to 2.0.2.
     new 056f8eed57 gnu: r-callr: Update to 3.7.2.
     new 5897c7b6f2 gnu: r-readxl: Update to 1.4.1.
     new 22d4155e73 gnu: r-modelr: Update to 0.1.9.
     new c486b129fa gnu: r-shinyfiles: Update to 0.9.3.
     new 9849c6d77d gnu: r-haven: Update to 2.5.1.
     new 2b261d2c0a gnu: r-paletteer: Update to 1.4.1.
     new 2d013e0e99 gnu: r-palmerpenguins: Update to 0.1.1.
     new 69f2a535e2 gnu: r-prismatic: Update to 1.1.1.
     new c212709262 gnu: r-restrserve: Update to 1.2.1.
     new 3b389cccff gnu: r-lpsolve: Update to 5.6.16.
     new fc802d489a gnu: r-progressr: Update to 0.11.0.
     new fedc98021e gnu: r-broom: Update to 1.0.1.
     new 2313441cea gnu: r-jomo: Update to 2.7-4.
     new bbbc036b09 gnu: r-scatterplot3d: Update to 0.3-42.
     new 4acecac456 gnu: r-cli: Update to 3.4.0.
     new 8ce03b223a gnu: r-xfun: Update to 0.33.
     new c0f7048daa gnu: r-pillar: Update to 1.8.1.
     new b58685a375 gnu: r-tinytex: Update to 0.41.
     new 4905326be2 gnu: r-statnet-common: Update to 4.7.0.
     new 57df402147 gnu: r-urca: Update to 1.3-3.
     new ff9b9f6001 gnu: r-cubature: Update to 2.0.4.5.
     new 29f9945039 gnu: r-np: Update to 0.60-14.
     new b475e4b381 gnu: r-radiant-data: Update to 1.4.5.
     new 9ef90c6d34 gnu: r-vim: Update to 6.2.2.
     new 6e03a26f2c gnu: r-arules: Update to 1.7-4.
     new de2564a2b2 gnu: r-zip: Update to 2.2.1.
     new 8c381850af gnu: r-dtplyr: Update to 1.2.2.
     new ffd7c3890a gnu: r-reticulate: Update to 1.26.
     new 4a3cc52d9c gnu: r-factominer: Update to 2.6.
     new acc4256ccb gnu: r-hdf5r: Update to 1.3.6.
     new cb9d49c18d gnu: r-rbibutils: Update to 2.2.9.
     new d7e46a3b9a gnu: r-officer: Update to 0.4.4.
     new 567af5689f gnu: r-insight: Update to 0.18.3.
     new 3d307748c7 gnu: r-flextable: Update to 0.8.0.
     new 143b69422a gnu: r-abcrf: Update to 1.9.
     new fb403a147b gnu: r-mosaiccore: Update to 0.9.2.
     new 784a5d05fe gnu: r-labelled: Update to 2.10.0.
     new 923bc62935 gnu: r-ggformula: Update to 0.10.2.
     new f9e5d17bb4 gnu: r-mosaicdata: Update to 0.20.3.
     new eb148988b0 gnu: r-raster: Update to 3.6-3.
     new 5a5e52e919 gnu: r-mosaic: Update to 1.8.4.
     new 4b4415a9d7 gnu: r-furrr: Update to 0.3.1.
     new 4d1620474b gnu: r-emmeans: Update to 1.8.1-1.
     new e6dc7908cc gnu: r-tmb: Update to 1.9.1.
     new 12aba62c33 gnu: r-bayestestr: Update to 0.13.0.
     new 523f82ffd0 gnu: r-performance: Update to 0.9.2.
     new a4f40ff0ba gnu: r-effectsize: Update to 0.7.0.5.
     new 0045ed1e32 gnu: r-gitcreds: Update to 0.1.2.
     new 53d46b7a83 gnu: r-gh: Update to 1.3.1.
     new 8766e41ecf gnu: r-gert: Update to 1.9.0.
     new e9eb863bde gnu: r-tweedie: Update to 2.3.5.
     new 09ed52404b gnu: r-chk: Update to 0.8.1.
     new 9dbbd84bac gnu: r-rcppalgos: Update to 2.6.0.
     new 941500d6ec gnu: r-arm: Update to 1.13-1.
     new abb5525ffe gnu: r-admisc: Update to 0.30.
     new 2e87c2e76c gnu: r-waveslim: Update to 1.8.4.
     new 5f65744b7d gnu: r-tidytree: Update to 0.4.0.
     new 45ad4c4c87 gnu: r-sparsesvd: Update to 0.2-1.
     new 3c43993891 gnu: r-tractor-base: Update to 3.3.5.1.
     new 8cce3f51fc gnu: r-als: Update to 0.0.7.
     new b6bb01e680 gnu: r-ontologyindex: Update to 2.10.
     new 0d032e48e8 gnu: r-gargle: Update to 1.2.1.
     new 1cd0e82a5f gnu: r-gmp: Update to 0.6-6.
     new 110c53067c gnu: r-fields: Update to 14.1.
     new ae15cb2141 gnu: r-globals: Update to 0.16.1.
     new 7f220c890a gnu: r-future: Update to 1.28.0.
     new 36ab34a539 gnu: r-future-apply: Update to 1.9.1.
     new 7b797d4a70 gnu: r-blockmodeling: Update to 1.1.3.
     new e44e07965c gnu: r-gamlss-dist: Update to 6.0-5.
     new 7e93dbc2bb gnu: r-spdata: Update to 2.2.0.
     new ef1b6a6318 gnu: r-spdep: Update to 1.2-5.
     new 43f4a370a3 gnu: r-bookdown: Update to 0.29.
     new d414bb103b gnu: r-tweenr: Update to 2.0.2.
     new ac9c3bee73 gnu: r-ggforce: Update to 0.3.4.
     new 3abd67e6cb gnu: r-gbm: Update to 2.1.8.1.
     new c47618d453 gnu: r-ggfun: Update to 0.0.7.
     new bcc7969a95 gnu: r-gridtext: Update to 0.1.5.
     new 12fca73dd8 gnu: r-ggtext: Update to 0.1.2.
     new 47676e6b9e gnu: r-aplot: Update to 0.1.7.
     new 25013b0ffd gnu: r-rsparse: Update to 0.5.1.
     new c027f3ce98 gnu: r-text2vec: Update to 0.6.2.
     new 544479ba7d gnu: r-lintr: Update to 3.0.1.
     new 3e9da8520d gnu: r-sctransform: Update to 0.3.4.
     new c9e6f29960 gnu: r-enrichr: Update to 3.1.
     new 4db93ca44b gnu: r-umap: Update to 0.2.9.0.
     new e133664c54 gnu: r-uwot: Update to 0.1.14.
     new d7b35febfc gnu: r-leiden: Update to 0.4.3.
     new e434557c5a gnu: r-patchwork: Update to 1.1.2.
     new 9686a975c7 gnu: r-covr: Update to 3.6.1.
     new 294e5589b9 gnu: r-graphlayouts: Update to 0.8.1.
     new 01e279bb8b gnu: r-terra: Update to 1.6-17.
     new 1755c577bd gnu: r-tidygraph: Update to 1.2.2.
     new 2988d6859a gnu: r-parameters: Update to 0.18.2.
     new 07de724b82 gnu: r-lifecycle: Update to 1.0.2.
     new 1ac8852caa gnu: r-pmcmrplus: Update to 1.9.6.
     new eca7c73a47 gnu: r-accsda: Update to 1.1.2.
     new 7739531995 gnu: r-randtoolbox: Update to 2.0.2.
     new 5e3b1e75f7 gnu: r-gdina: Update to 2.9.3.
     new b43a9a1e52 gnu: r-caret: Update to 6.0-93.
     new f1896a804a gnu: r-anndata: Update to 0.7.5.4.
     new 8ebb59f598 gnu: r-qqconf: Update to 1.3.0.
     new 96a3a300c6 gnu: r-proxyc: Update to 0.3.2.
     new 8643467fe3 gnu: r-quanteda: Update to 3.2.3.
     new d7e41a6251 gnu: r-matrixcalc: Update to 1.0-6.
     new 15ea8ca8ec gnu: r-matrixextra: Update to 0.1.13.
     new b311dffdfb gnu: r-regsem: Update to 1.9.3.
     new 7469dc9b85 gnu: r-semplot: Update to 1.1.6.
     new c1bf0bd4a6 gnu: r-cdm: Update to 8.2-6.
     new c85630d207 gnu: r-tam: Update to 4.1-4.
     new 4a124387c1 gnu: r-rstan: Update to 2.21.7.
     new 47a07d6c36 gnu: r-zseq: Update to 0.2.1.
     new da4342ff53 gnu: r-latex2exp: Update to 0.9.5.
     new 4eabf31e36 gnu: r-projpred: Update to 2.2.0.
     new 8b0e24e3e3 gnu: r-distributional: Update to 0.3.1.
     new 897c62ad00 gnu: r-posterior: Update to 1.3.1.
     new 72e5d0fe2d gnu: r-scatterpie: Update to 0.1.8.
     new 77082a3302 gnu: r-binman: Update to 0.1.3.
     new 8120ce3527 gnu: r-wdman: Update to 0.2.6.
     new 92ec2cdd44 gnu: r-rselenium: Update to 1.7.9.
     new 8a3b2bd804 gnu: r-conquer: Update to 1.3.1.
     new ea03352e0a gnu: r-iml: Update to 0.11.1.
     new 024871933c gnu: r-yardstick: Update to 1.1.0.
     new cd16977b72 gnu: r-scico: Update to 1.3.1.
     new 602ba03fa7 gnu: r-janeaustenr: Update to 1.0.0.
     new e919e4561e gnu: r-hunspell: Update to 3.0.2.
     new ca687072c2 gnu: r-tidytext: Update to 0.3.4.
     new 706d117c58 gnu: r-parsnip: Update to 1.0.1.
     new a2a8615d3e gnu: r-infer: Update to 1.0.3.
     new 5078622ffa gnu: r-modeldata: Update to 1.0.1.
     new d7b2231319 gnu: r-metafor: Update to 3.8-1.
     new 36faa3e971 gnu: r-altmeta: Update to 4.1.
     new cccad5eedd gnu: r-seuratobject: Update to 4.1.1.
     new ac19f68dde gnu: r-phangorn: Update to 2.10.0.
     new 6658442cc1 gnu: r-calculus: Update to 0.3.4.
     new 0822d26eb8 gnu: r-lgr: Update to 0.4.4.
     new 8760fc2a88 gnu: r-mlr3: Update to 0.14.0.
     new 8a242a64e1 gnu: r-mlr3learners: Update to 0.5.4.
     new ac232fe3d0 gnu: r-bbotk: Update to 0.5.4.
     new 28747e5f45 gnu: r-mlr3tuning: Update to 0.14.0.
     new 4632498971 gnu: r-delaporte: Update to 8.0.3.
     new c4ffadb1e4 gnu: r-gganimate: Update to 1.0.8.
     new 381f145df7 gnu: r-exactextractr: Update to 0.9.0.
     new ce4774f0ec gnu: r-rapiserialize: Update to 0.1.2.
     new 83ccde1d38 gnu: r-qs: Update to 0.25.4.
     new 854025663c gnu: r-tfruns: Update to 1.5.1.
     new 3336c70a5f gnu: r-paws-common: Update to 0.5.0.
     new af8dfcee5c gnu: r-paws-compute: Update to 0.1.13.
     new 3f45830596 gnu: r-zoolog: Update to 1.1.0.
     new 32b429800b gnu: r-crul: Update to 1.3.
     new 3bb3bc8553 gnu: r-webmockr: Update to 0.8.2.
     new f41628ed86 gnu: r-wordspace: Update to 0.2-8.
     new 8435311ea6 gnu: r-ggh4x: Update to 0.2.2.
     new b1d59cb30b gnu: r-cluster: Update to 2.1.4.
     new 9e282c408c gnu: r-matrix: Update to 1.5-1.
     new fb381189f7 gnu: r-nlme: Update to 3.1-159.
     new 3325cf689a gnu: r-survival: Update to 3.4-0.
     new 911224970d gnu: r-stringr: Update to 1.4.1.
     new 6e47b0f88e gnu: r-evaluate: Update to 0.16.
     new 68552107e9 gnu: r-knitr: Update to 1.40.
     new 89251a114f gnu: r-rlang: Update to 1.0.5.
     new b903dcd55c gnu: r-dplyr: Update to 1.0.10.
     new aaeaef0d01 gnu: r-rversions: Update to 2.1.2.
     new f0a4672485 gnu: r-desc: Update to 1.4.2.
     new 06943cf4f1 gnu: r-openssl: Update to 2.0.3.
     new 0fd63d8584 gnu: r-httr: Update to 1.4.4.
     new beb7ddb41d gnu: r-rstudioapi: Update to 0.14.
     new 7aba12b6d9 gnu: r-hms: Update to 1.1.2.
     new 44ab19f623 gnu: r-rcpparmadillo: Update to 0.11.2.4.0.
     new 855bd834c3 gnu: r-rmarkdown: Update to 2.16.
     new 734f64aa17 gnu: r-gtable: Update to 0.3.1.
     new aa0865e8cc gnu: r-rsqlite: Update to 2.2.17.
     new 5667e371fa gnu: r-viridislite: Update to 0.4.1.
     new b02b5544f2 gnu: r-tidyr: Update to 1.2.1.
     new 2d34ff8133 gnu: r-base64: Update to 2.0.1.
     new 8313464be6 gnu: r-hmisc: Update to 4.7-1.
     new 04511fa0de gnu: r-statmod: Update to 1.4.37.
     new 3c35d95b32 gnu: r-rrcov: Update to 1.7-1.
     new 48e46212c5 gnu: r-matrixmodels: Update to 0.5-1.
     new 16c2f27750 gnu: r-sn: Update to 2.1.0.
     new 18df77f876 gnu: r-forcats: Update to 0.5.2.
     new 659efed5c1 gnu: r-clubsandwich: Update to 0.5.8.
     new f8f3cffedc gnu: r-desctools: Update to 0.99.46.
     new 8c620a6036 import/cran: download: Accept optional REF argument.
     new ec92bcaadd import/cran: description->package: Use COND and computed 
booleans.
     new 87a9f03b32 gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3.
     new 9ed635cd9a gnu: python-pyvcf: Use older setuptools.
     new 8084e3bdb3 gnu: python-pyvcf: Update to 0.6.8-0.476169c.

The 214 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/local.mk                                       |   2 +-
 gnu/packages/bioconductor.scm                      |  16 +-
 gnu/packages/bioinformatics.scm                    |  72 +-
 gnu/packages/cran.scm                              | 877 +++++++++++----------
 gnu/packages/databases.scm                         |   4 +-
 gnu/packages/machine-learning.scm                  |  81 +-
 ...v.patch => r-httpuv-1.6.6-unvendor-libuv.patch} |  13 +-
 gnu/packages/statistics.scm                        | 145 ++--
 guix/import/cran.scm                               |  66 +-
 9 files changed, 669 insertions(+), 607 deletions(-)
 rename gnu/packages/patches/{r-httpuv-1.5.5-unvendor-libuv.patch => 
r-httpuv-1.6.6-unvendor-libuv.patch} (93%)