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branch master updated: gnu: python-pybedtools: Update to 0.9.0.
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guix-commits |
Subject: |
branch master updated: gnu: python-pybedtools: Update to 0.9.0. |
Date: |
Fri, 10 Jun 2022 02:13:38 -0400 |
This is an automated email from the git hooks/post-receive script.
vagrantc pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new b483ef1a88 gnu: python-pybedtools: Update to 0.9.0.
b483ef1a88 is described below
commit b483ef1a889ad3f3b523d6f09f810a4618fc753e
Author: Vagrant Cascadian <vagrant@reproducible-builds.org>
AuthorDate: Thu Jun 9 23:03:03 2022 -0700
gnu: python-pybedtools: Update to 0.9.0.
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.9.0.
[description]: Update to satisfy guix lint.
[license]: Update to expat and lgpl2.1+.
---
gnu/packages/bioinformatics.scm | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c53a2920ac..87df6c3515 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -830,13 +830,13 @@ servers supporting the protocol.")
(define-public python-pybedtools
(package
(name "python-pybedtools")
- (version "0.8.2")
+ (version "0.9.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "pybedtools" version))
(sha256
(base32
- "0wc7z8g8prgdx7n5chjva2fdq03wiwhqisjjxzkjg1j5k5ha7151"))))
+ "18rhzk08d3rpxhi5xh6pqg64x6v5q3daw6y3v54k85v4swncjrwj"))))
(build-system python-build-system)
(arguments
`(#:modules ((srfi srfi-26)
@@ -896,11 +896,16 @@ servers supporting the protocol.")
(home-page "https://pythonhosted.org/pybedtools/")
(synopsis "Python wrapper for BEDtools programs")
(description
- "pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs,
+ "This package is a Python wrapper for Aaron Quinlan's BEDtools programs,
which are widely used for genomic interval manipulation or \"genome algebra\".
pybedtools extends BEDTools by offering feature-level manipulations from with
Python.")
- (license license:gpl2+)))
+ ;; pypi lists GPLv2 in the PKG-INFO and website, but was relicensed in
+ ;; version 0.9.0 and the LICENSE.txt is consistant with the source code.
+ ;;
+ ;; pybedtools/include/gzstream.cpp and pybedtools/include/gzstream.h are
+ ;; licensed lgpl2.1+
+ (license (list license:expat license:lgpl2.1+))))
(define-public python-biom-format
(package
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