[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch master updated: gnu: Add r-acme.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-acme. |
Date: |
Thu, 14 Apr 2022 06:33:53 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 55be5fc400 gnu: Add r-acme.
55be5fc400 is described below
commit 55be5fc400ed30cceca279de13dcbe270b60fee4
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Wed Apr 13 16:12:58 2022 +0200
gnu: Add r-acme.
* gnu/packages/bioconductor.scm (r-acme): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d3e16cd859..8664f1139f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11661,6 +11661,33 @@ storing these data. Basic methods are
accessing/replacing, subsetting,
printing and plotting @code{aCGH} objects.")
(license license:gpl2)))
+(define-public r-acme
+ (package
+ (name "r-acme")
+ (version "2.50.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ACME" version))
+ (sha256
+ (base32
+ "0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"))))
+ (properties `((upstream-name . "ACME")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-biocgenerics))
+ (home-page "https://bioconductor.org/packages/aCGH/")
+ (synopsis "Calculating microarray enrichment")
+ (description
+ "This package implements @dfn{algorithms for calculating microarray
+enrichment} (ACME), and it is a set of tools for analysing tiling array of
+@dfn{combined chromatin immunoprecipitation with DNA microarray} (ChIP/chip),
+DNAse hypersensitivity, or other experiments that result in regions of the
+genome showing enrichment. It does not rely on a specific array technology
+(although the array should be a tiling array), is very general (can be applied
+in experiments resulting in regions of enrichment), and is very insensitive to
+array noise or normalization methods. It is also very fast and can be applied
+on whole-genome tiling array experiments quite easily with enough memory.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- branch master updated: gnu: Add r-acme.,
guix-commits <=