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01/02: gnu: python-scanpy: Use GUIX_PYTHONPATH.
From: |
guix-commits |
Subject: |
01/02: gnu: python-scanpy: Use GUIX_PYTHONPATH. |
Date: |
Sat, 20 Nov 2021 18:41:21 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 664721422cd17c151df00b9ecab268d1aa18e3b3
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sun Nov 21 00:39:57 2021 +0100
gnu: python-scanpy: Use GUIX_PYTHONPATH.
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 56492f5..05febb3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11956,10 +11956,10 @@ implementation differs in these ways:
;; packaged yet.
(delete-file
"scanpy/tests/external/test_scanorama_integrate.py")
- (setenv "PYTHONPATH"
+ (setenv "GUIX_PYTHONPATH"
(string-append (getcwd) ":"
(assoc-ref inputs
"python-anndata:source") ":"
- (getenv "PYTHONPATH")))
+ (getenv "GUIX_PYTHONPATH")))
(invoke "pytest" "-vv"
"-k"
;; Plot tests that fail.