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207/353: gnu: r-rbowtie2: Update to 2.0.0.
From: |
guix-commits |
Subject: |
207/353: gnu: r-rbowtie2: Update to 2.0.0. |
Date: |
Thu, 4 Nov 2021 18:14:45 -0400 (EDT) |
rekado pushed a commit to branch r-updates
in repository guix.
commit 98e4bca1a307e4a99a5f342b91544cf566dfc7f6
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 4 22:04:28 2021 +0000
gnu: r-rbowtie2: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
---
gnu/packages/bioconductor.scm | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c1b7f0d..766e4fa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9007,18 +9007,22 @@ This algorithm is based on the publication by Hart et
al., 2013 (Pubmed ID
(define-public r-rbowtie2
(package
(name "r-rbowtie2")
- (version "1.14.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rbowtie2" version))
(sha256
(base32
- "0r5yqjal48xlcv5cidi7p3zwygvsllmv2zzkwkc9kfq083l2i4ih"))))
+ "0xpvrx2ak9x913sym4l46ycwbnmpcdwb3bf3dfd2gsp0krv8vh1x"))))
(properties `((upstream-name . "Rbowtie2")))
(build-system r-build-system)
+ (propagated-inputs
+ `(("r-magrittr" ,r-magrittr)
+ ("r-rsamtools" ,r-rsamtools)))
(inputs
- `(("zlib" ,zlib)))
+ `(("samtools" ,samtools)
+ ("zlib" ,zlib)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/Rbowtie2/")
- 199/353: gnu: r-massspecwavelet: Update to 1.60.0., (continued)
- 199/353: gnu: r-massspecwavelet: Update to 1.60.0., guix-commits, 2021/11/04
- 196/353: gnu: r-quantro: Update to 1.28.0., guix-commits, 2021/11/04
- 195/353: gnu: r-gcrma: Update to 2.66.0., guix-commits, 2021/11/04
- 202/353: gnu: r-wiggleplotr: Update to 1.18.0., guix-commits, 2021/11/04
- 201/353: gnu: r-wrench: Update to 1.12.0., guix-commits, 2021/11/04
- 197/353: gnu: r-yarn: Update to 1.20.0., guix-commits, 2021/11/04
- 194/353: gnu: r-yapsa: Update to 1.19.0., guix-commits, 2021/11/04
- 205/353: gnu: r-zinbwave: Update to 1.16.0., guix-commits, 2021/11/04
- 198/353: gnu: r-roar: Update to 1.30.0., guix-commits, 2021/11/04
- 211/353: gnu: r-iclusterplus: Update to 1.30.0., guix-commits, 2021/11/04
- 207/353: gnu: r-rbowtie2: Update to 2.0.0.,
guix-commits <=
- 209/353: gnu: r-arrmnormalization: Update to 1.34.0., guix-commits, 2021/11/04
- 213/353: gnu: r-sgseq: Update to 1.28.0., guix-commits, 2021/11/04
- 216/353: gnu: r-rqc: Update to 1.28.0., guix-commits, 2021/11/04
- 219/353: gnu: r-ropls: Update to 1.26.0., guix-commits, 2021/11/04
- 222/353: gnu: r-rsubread: Update to 2.8.0., guix-commits, 2021/11/04
- 223/353: gnu: r-flowutils: Update to 1.58.0., guix-commits, 2021/11/04
- 224/353: gnu: r-consensusclusterplus: Update to 1.58.0., guix-commits, 2021/11/04
- 225/353: gnu: r-cytolib: Update to 2.6.0., guix-commits, 2021/11/04
- 226/353: gnu: r-flowcore: Update to 2.6.0., guix-commits, 2021/11/04
- 229/353: gnu: r-ggcyto: Update to 1.22.0., guix-commits, 2021/11/04