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01/353: guix: Upgrade to Bioconductor 3.14.
From: |
guix-commits |
Subject: |
01/353: guix: Upgrade to Bioconductor 3.14. |
Date: |
Thu, 4 Nov 2021 18:13:29 -0400 (EDT) |
rekado pushed a commit to branch r-updates
in repository guix.
commit 31508c9d5d3c0a0721bf61939a12c461e28b8a8b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 4 17:36:48 2021 +0000
guix: Upgrade to Bioconductor 3.14.
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.14.
* guix/import/cran.scm (%bioconductor-version): Same.
---
guix/build-system/r.scm | 2 +-
guix/import/cran.scm | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm
index 5e4b23c..96d37d5 100644
--- a/guix/build-system/r.scm
+++ b/guix/build-system/r.scm
@@ -59,7 +59,7 @@ release corresponding to NAME and VERSION."
"/src/contrib/"
name "_" version ".tar.gz")
;; TODO: use %bioconductor-version from (guix import cran)
- (string-append "https://bioconductor.org/packages/3.13"
+ (string-append "https://bioconductor.org/packages/3.14"
type-url-part
"/src/contrib/"
name "_" version ".tar.gz"))))
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 5f5f73c..07a5656 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -155,9 +155,9 @@ package definition."
(define %cran-canonical-url "https://cran.r-project.org/package=")
(define %bioconductor-url "https://bioconductor.org/packages/")
-;; The latest Bioconductor release is 3.13. Bioconductor packages should be
+;; The latest Bioconductor release is 3.14. Bioconductor packages should be
;; updated together.
-(define %bioconductor-version "3.13")
+(define %bioconductor-version "3.14")
(define* (bioconductor-packages-list-url #:optional type)
(string-append "https://bioconductor.org/packages/"
- branch r-updates updated (0e665e9 -> b3d6a2e), guix-commits, 2021/11/04
- 02/353: gnu: Add r-msfeatures., guix-commits, 2021/11/04
- 01/353: guix: Upgrade to Bioconductor 3.14.,
guix-commits <=
- 03/353: gnu: r-biocparallel: Update to 1.28.0., guix-commits, 2021/11/04
- 04/353: gnu: r-aneufinder: Update to 1.22.0., guix-commits, 2021/11/04
- 07/353: gnu: r-coverageview: Update to 1.32.0., guix-commits, 2021/11/04
- 10/353: gnu: r-deepsnv: Update to 1.40.0., guix-commits, 2021/11/04
- 09/353: gnu: r-decipher: Update to 2.22.0., guix-commits, 2021/11/04
- 05/353: gnu: r-biocversion: Update to 3.14.0., guix-commits, 2021/11/04
- 11/353: gnu: r-delayedarray: Update to 0.20.0., guix-commits, 2021/11/04
- 17/353: gnu: r-affycompatible: Update to 1.54.0., guix-commits, 2021/11/04
- 06/353: gnu: r-biocgenerics: Update to 0.40.0., guix-commits, 2021/11/04
- 08/353: gnu: r-cummerbund: Update to 2.36.0., guix-commits, 2021/11/04