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06/11: gnu: clipper: Disable non-deterministic test.
From: |
guix-commits |
Subject: |
06/11: gnu: clipper: Disable non-deterministic test. |
Date: |
Tue, 12 Oct 2021 12:14:24 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit 9101c7bf8eb63762b2231a31a87d830c0a6b8e52
Author: Felix Gruber <felgru@posteo.net>
AuthorDate: Sun Oct 10 15:04:34 2021 +0000
gnu: clipper: Disable non-deterministic test.
This test fails/succeeds non-deterministically.
* gnu/packages/bioinformatics.scm (clipper)[arguments]: Disable
non-deterministic test test_get_FDR_cutoff_mean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
gnu/packages/bioinformatics.scm | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 082e47b..7dec74f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22,6 +22,7 @@
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
+;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2363,7 +2364,13 @@ databases.")
(let ((out (assoc-ref outputs "out")))
(for-each make-file-writable
(find-files out "\\.gz$"))
- #t))))))
+ #t)))
+ (add-after 'unpack 'disable-nondeterministic-test
+ (lambda _
+ ;; This test fails/succeeds non-deterministically.
+ (substitute* "clipper/test/test_call_peak.py"
+ (("test_get_FDR_cutoff_mean") "_test_get_FDR_cutoff_mean"))
+ #t)))))
(inputs
`(("htseq" ,htseq)
("python-pybedtools" ,python-pybedtools)
- branch master updated (bbe121a -> 371aa57), guix-commits, 2021/10/12
- 02/11: gnu: python-dask: Update to 2021.9.1., guix-commits, 2021/10/12
- 01/11: gnu: python-pandas: Update to 1.3.3., guix-commits, 2021/10/12
- 04/11: gnu: python-eliot: Update to 1.13.0., guix-commits, 2021/10/12
- 06/11: gnu: clipper: Disable non-deterministic test.,
guix-commits <=
- 03/11: gnu: python-distributed: Update to 2021.09.1., guix-commits, 2021/10/12
- 05/11: gnu: synapse: Update to 1.44.0., guix-commits, 2021/10/12
- 07/11: gnu: proj: Update to 7.2.1., guix-commits, 2021/10/12
- 09/11: gnu: Add python-cligj., guix-commits, 2021/10/12
- 10/11: gnu: Add python-fiona., guix-commits, 2021/10/12
- 11/11: gnu: Add python-geopandas., guix-commits, 2021/10/12
- 08/11: gnu: Add python-pyproj., guix-commits, 2021/10/12