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13/13: gnu: Add python-coolbox.
From: |
guix-commits |
Subject: |
13/13: gnu: Add python-coolbox. |
Date: |
Mon, 30 Aug 2021 12:50:52 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 7712154ccb115e7d8d5b040fb45109369e42bc4b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Aug 30 18:29:25 2021 +0200
gnu: Add python-coolbox.
* gnu/packages/bioinformatics.scm (python-coolbox): New variable.
---
gnu/packages/bioinformatics.scm | 49 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 49 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac918ea..eef22b8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -103,6 +103,7 @@
#:use-module (gnu packages java)
#:use-module (gnu packages java-compression)
#:use-module (gnu packages jemalloc)
+ #:use-module (gnu packages jupyter)
#:use-module (gnu packages linux)
#:use-module (gnu packages lisp-xyz)
#:use-module (gnu packages logging)
@@ -14899,6 +14900,54 @@ feature is fast retrieval of range queries into numpy
arrays.")
e.g. from GenBank or Gff files, or Biopython SeqRecords.")
(license license:expat)))
+(define-public python-coolbox
+ (package
+ (name "python-coolbox")
+ (version "0.3.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "coolbox" version))
+ (sha256
+ (base32
+ "0gqp76285w9klswr47y6kxbzwhv033b26jfa179kccfhiaq5p2xa"))))
+ (build-system python-build-system)
+ (arguments '(#:tests? #false)) ; there are none
+ (inputs
+ `(("pybind11" ,pybind11)))
+ (propagated-inputs
+ `(("python-cooler" ,python-cooler)
+ ("python-dna-features-viewer" ,python-dna-features-viewer)
+ ("python-fire" ,python-fire)
+ ("python-h5py" ,python-h5py)
+ ("python-intervaltree" ,python-intervaltree)
+ ("python-ipywidgets" ,python-ipywidgets)
+ ("jupyter" ,jupyter)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-nbformat" ,python-nbformat)
+ ("python-numpy" ,python-numpy)
+ ("python-numpydoc" ,python-numpydoc)
+ ("python-pandas" ,python-pandas)
+ ("python-pybbi" ,python-pybbi)
+ ("python-pytest" ,python-pytest)
+ ("python-scipy" ,python-scipy)
+ ("python-statsmodels" ,python-statsmodels)
+ ("python-strawc" ,python-strawc)
+ ("python-svgutils" ,python-svgutils)
+ ("python-termcolor" ,python-termcolor)
+ ("python-voila" ,python-voila)))
+ (home-page "https://github.com/GangCaoLab/CoolBox")
+ (synopsis "Genomic data visualization toolkit")
+ (description
+ "CoolBox is a toolkit for visual analysis of genomics data. It aims to
+be highly compatible with the Python ecosystem, easy to use and highly
+customizable with a well-designed user interface. It can be used in various
+visualization situations, for example, to produce high-quality genome track
+plots or fetch common used genomic data files with a Python script or command
+line, interactively explore genomic data within Jupyter environment or web
+browser.")
+ (license license:gpl3+)))
+
(define-public r-ascat
(package
(name "r-ascat")
- 04/13: gnu: Add python-pytest-console-scripts., (continued)
- 04/13: gnu: Add python-pytest-console-scripts., guix-commits, 2021/08/30
- 06/13: gnu: Add python-pytest-mock-3., guix-commits, 2021/08/30
- 08/13: gnu: Add python-jupyter-server., guix-commits, 2021/08/30
- 07/13: gnu: Add python-anyio., guix-commits, 2021/08/30
- 05/13: gnu: Add python-pytest-tornasync., guix-commits, 2021/08/30
- 12/13: gnu: Add python-voila., guix-commits, 2021/08/30
- 03/13: gnu: Add python-dna-features-viewer., guix-commits, 2021/08/30
- 09/13: gnu: python-scanpy: Update to 1.8.1., guix-commits, 2021/08/30
- 10/13: gnu: python-anndata: Fetch sources from git., guix-commits, 2021/08/30
- 11/13: gnu: python-scikit-learn: Update to 0.24.2., guix-commits, 2021/08/30
- 13/13: gnu: Add python-coolbox.,
guix-commits <=