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branch master updated: gnu: Add r-ballgown.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-ballgown. |
Date: |
Wed, 25 Aug 2021 06:30:57 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 2f16659 gnu: Add r-ballgown.
2f16659 is described below
commit 2f16659b404eac09f5174fe5e16cc97f21643bd7
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Aug 25 12:30:33 2021 +0200
gnu: Add r-ballgown.
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e0644ae..36ab137 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13666,6 +13666,40 @@ starting site, start codon, stop codon and
transcription ending site.")
visualizations for publication-quality multi-panel figures.")
(license license:gpl2+)))
+(define-public r-ballgown
+ (package
+ (name "r-ballgown")
+ (version "2.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ballgown" version))
+ (sha256
+ (base32
+ "0ff8z4pfgzai2q4aafclg36bhsi9jwl9xhh1p9fqhmikisscq7i1"))))
+ (properties `((upstream-name . "ballgown")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-sva" ,r-sva)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/ballgown")
+ (synopsis "Flexible, isoform-level differential expression analysis")
+ (description
+ "This package provides tools for statistical analysis of assembled
+transcriptomes, including flexible differential expression analysis,
+visualization of transcript structures, and matching of assembled transcripts
+to annotation.")
+ (license license:artistic2.0)))
+
(define-public r-tximeta
(package
(name "r-tximeta")
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