01/65: gnu: r-with-tests: Hardcode path to coreutils’ rm

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 9ac9bc6051374f4faa3e43fd89b70fc7a73c5bf4
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Mon Jul 26 09:25:20 2021 +0200

    gnu: r-with-tests: Hardcode path to coreutils’ rm
    
    When running R in a container like this
    
        guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 
'Sys.timezone()'
    
    it would print an additional line
    
        sh: rm: command not found
    
    before exiting.
    
    * gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
    to patch call to `rm` and rename phase to reflect what it does now.
---
 gnu/packages/statistics.scm | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ce9f1bf..7ba7d9f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -213,12 +213,15 @@ This package also provides @command{xls2csv} to export 
Excel files to CSV.")
              (substitute* "src/library/base/makebasedb.R"
                (("compress = TRUE") "compress = FALSE"))
              #t))
-         (add-before 'configure 'patch-uname
+         (add-before 'configure 'patch-coreutils-paths
            (lambda* (#:key inputs #:allow-other-keys)
-             (let ((uname-bin (string-append (assoc-ref inputs "coreutils")
-                                             "/bin/uname")))
+             (let* ((coreutils (assoc-ref inputs "coreutils"))
+                   (uname-bin (string-append coreutils "/bin/uname"))
+                   (rm-bin (string-append coreutils "/bin/rm")))
                (substitute* "src/scripts/R.sh.in"
-                 (("uname") uname-bin)))
+                 (("uname") uname-bin))
+               (substitute* "src/unix/sys-std.c"
+                 (("rm -Rf ") (string-append rm-bin " -Rf "))))
              #t))
          (add-after 'unpack 'build-reproducibly
            (lambda _