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05/13: gnu: Add tombo.
From: |
guix-commits |
Subject: |
05/13: gnu: Add tombo. |
Date: |
Wed, 21 Jul 2021 07:52:04 -0400 (EDT) |
lbraun pushed a commit to branch master
in repository guix.
commit 18a02fe7ca0c7be77d40e9953f7b07685cabd80d
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Tue Jul 20 11:29:57 2021 +0200
gnu: Add tombo.
* gnu/packages/bioinformatics.scm (tombo): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9ff16e..e418b2c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14560,3 +14560,36 @@ quantifying single-cell chromatin data, computing
per-cell quality control
metrics, dimension reduction and normalization, visualization, and DNA
sequence motif analysis.")
(license license:expat))))
+
+(define-public tombo
+ (package
+ (name "tombo")
+ (version "1.5.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ont-tombo" version))
+ (sha256
+ (base32
+ "1023hadgcsgi53kz53ql45207hfizf9sw57z0qij3ay1bx68zbpm"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-cython" ,python-cython)
+ ("python-nose2" ,python-nose2)))
+ ;; The package mainly consists of a command-line tool, but also has a
+ ;; Python-API. Thus these must be propagated.
+ (propagated-inputs
+ `(("python-future" ,python-future)
+ ("python-h5py" ,python-h5py)
+ ("python-mappy" ,python-mappy)
+ ("python-numpy" ,python-numpy)
+ ("python-scipy" ,python-scipy)
+ ("python-tqdm" ,python-tqdm)
+ ("python-rpy2" ,python-rpy2)))
+ (home-page "https://github.com/nanoporetech/tombo")
+ (synopsis "Analysis of raw nanopore sequencing data")
+ (description "Tombo is a suite of tools primarily for the identification of
+modified nucleotides from nanopore sequencing data. Tombo also provides tools
+for the analysis and visualization of raw nanopore signal.")
+ ;; Some parts may be BSD-3-licensed.
+ (license license:mpl2.0)))
- 01/13: gnu: Add r-norm., (continued)
- 01/13: gnu: Add r-norm., guix-commits, 2021/07/21
- 04/13: gnu: Add r-rmisc., guix-commits, 2021/07/21
- 07/13: gnu: Add python-pyvcf., guix-commits, 2021/07/21
- 08/13: gnu: Add nanosv., guix-commits, 2021/07/21
- 03/13: gnu: Add r-glinternet., guix-commits, 2021/07/21
- 11/13: gnu: Add python-bash-kernel., guix-commits, 2021/07/21
- 13/13: gnu: Add python-sparqlkernel., guix-commits, 2021/07/21
- 06/13: gnu: checkm: Rename and update to 1.1.3., guix-commits, 2021/07/21
- 12/13: gnu: Add python-sparqlwrapper., guix-commits, 2021/07/21
- 10/13: gnu: Add r-battenberg., guix-commits, 2021/07/21
- 05/13: gnu: Add tombo.,
guix-commits <=
- 09/13: gnu: Add r-ascat., guix-commits, 2021/07/21