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branch master updated: gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene.
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guix-commits |
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branch master updated: gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene. |
Date: |
Mon, 12 Apr 2021 12:36:10 -0400 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new eb8da54 gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene.
eb8da54 is described below
commit eb8da54170919bc31946f492da1071dd491e942a
Author: hli <hli@mdc-berlin.de>
AuthorDate: Tue Mar 30 00:53:51 2021 +0200
gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene):
New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6b5c0a0..1717360 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -619,6 +619,32 @@ as provided by UCSC (hg38, Dec. 2013) and stored in
Biostrings objects.")
"This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0)))
+(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
+ (package
+ (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TxDb.Dmelanogaster.UCSC.dm6.ensGene"
+ version 'annotation))
+ (sha256
+ (base32
+ "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"))))
+ (properties
+ `((upstream-name . "TxDb.Dmelanogaster.UCSC.dm6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page
+ "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene")
+ (synopsis "Annotation package for TxDb object(s)")
+ (description
+ "This package exposes an annotation databases generated from UCSC by
+exposing these as TxDb objects.")
+ (license license:artistic2.0)))
+
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
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