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05/06: gnu: Add python-drep.
From: |
guix-commits |
Subject: |
05/06: gnu: Add python-drep. |
Date: |
Mon, 15 Mar 2021 06:47:10 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit ad34eb222c9ebc2b31f03b70ba6655ebe8ee74b5
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Mar 15 11:38:29 2021 +0100
gnu: Add python-drep.
* gnu/packages/bioinformatics.scm (python-drep): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b2d1045..c629b79 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13147,6 +13147,36 @@ create connections between analogous cells in
different batches without
altering the counts or PCA space.")
(license license:expat)))
+(define-public python-drep
+ (package
+ (name "python-drep")
+ (version "3.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "drep" version))
+ (sha256
+ (base32
+ "08vk0x6v5c5n7afgd5pcjhsvb424absypxy22hw1cm1n9kirbi77"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-biopython" ,python-biopython)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-seaborn" ,python-seaborn)
+ ("python-tqdm" ,python-tqdm)))
+ (home-page "https://github.com/MrOlm/drep")
+ (synopsis "De-replication of microbial genomes assembled from multiple
samples")
+ (description
+ "dRep is a Python program for rapidly comparing large numbers of genomes.
+dRep can also \"de-replicate\" a genome set by identifying groups of highly
+similar genomes and choosing the best representative genome for each genome
+set.")
+ (license license:expat)))
+
(define-public gffcompare
(let ((commit "be56ef4349ea3966c12c6397f85e49e047361c41")
(revision "1"))
- branch master updated (c3163fe -> 6e0ed09), guix-commits, 2021/03/15
- 01/06: gnu: guile-email-latest: Update to 0.2.2-1.ca0520a., guix-commits, 2021/03/15
- 02/06: gnu: Add python-uncertainties., guix-commits, 2021/03/15
- 04/06: gnu: Add python-lmfit., guix-commits, 2021/03/15
- 06/06: gnu: Add instrain., guix-commits, 2021/03/15
- 05/06: gnu: Add python-drep.,
guix-commits <=
- 03/06: gnu: Add python-asteval., guix-commits, 2021/03/15