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01/10: gnu: r-genefilter: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
01/10: gnu: r-genefilter: Move to (gnu packages bioconductor). |
Date: |
Fri, 12 Mar 2021 08:53:08 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit a35ea5fed953df46cb33e517487e0eac528ec027
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Mar 8 18:57:54 2021 +0100
gnu: r-genefilter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 28 ----------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ae8bae4..f6f7766 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1487,6 +1487,34 @@ structure.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-genefilter
+ (package
+ (name "r-genefilter")
+ (version "1.72.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "genefilter" version))
+ (sha256
+ (base32
+ "1c6h3qnjvphs977qhv5vafvsb108r0q7xhaayly6qv6adqfn94rn"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)
+ ("r-knitr" ,r-knitr)))
+ (propagated-inputs
+ `(("r-annotate" ,r-annotate)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-survival" ,r-survival)))
+ (home-page "https://bioconductor.org/packages/genefilter")
+ (synopsis "Filter genes from high-throughput experiments")
+ (description
+ "This package provides basic functions for filtering genes from
+high-throughput sequencing experiments.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package
(name "r-hpar")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b258b79..557961b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,34 +7387,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-genefilter
- (package
- (name "r-genefilter")
- (version "1.72.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "genefilter" version))
- (sha256
- (base32
- "1c6h3qnjvphs977qhv5vafvsb108r0q7xhaayly6qv6adqfn94rn"))))
- (build-system r-build-system)
- (native-inputs
- `(("gfortran" ,gfortran)
- ("r-knitr" ,r-knitr)))
- (propagated-inputs
- `(("r-annotate" ,r-annotate)
- ("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-survival" ,r-survival)))
- (home-page "https://bioconductor.org/packages/genefilter")
- (synopsis "Filter genes from high-throughput experiments")
- (description
- "This package provides basic functions for filtering genes from
-high-throughput sequencing experiments.")
- (license license:artistic2.0)))
-
(define-public r-deseq2
(package
(name "r-deseq2")
- branch master updated (323aec6 -> df6b3c2), guix-commits, 2021/03/12
- 01/10: gnu: r-genefilter: Move to (gnu packages bioconductor).,
guix-commits <=
- 02/10: gnu: r-deseq2: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 03/10: gnu: r-dexseq: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 04/10: gnu: r-annotationforge: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 05/10: gnu: r-rbgl: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 07/10: gnu: r-category: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 06/10: gnu: r-gseabase: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 08/10: gnu: r-gostats: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 09/10: gnu: r-shortread: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12
- 10/10: gnu: r-systempiper: Move to (gnu packages bioconductor)., guix-commits, 2021/03/12