07/08: gnu: r-deconstructsigs: Move from "annotation" to "package" section.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit eb3c105126beb583f3cfb25ccc48a4e43b7e6042
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Dec 17 11:40:31 2020 +0100

    gnu: r-deconstructsigs: Move from "annotation" to "package" section.
    
    * gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
---
 gnu/packages/bioconductor.scm | 56 +++++++++++++++++++++----------------------
 1 file changed, 28 insertions(+), 28 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bdedeab..befc2a9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -748,34 +748,6 @@ annotations.")
      "This is a manifest package for Illumina's EPIC methylation arrays.")
     (license license:artistic2.0)))
 
-;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
-;; from Bioconductor.
-(define-public r-deconstructsigs
-  (package
-    (name "r-deconstructsigs")
-    (version "1.8.0")
-    (source (origin
-              (method url-fetch)
-              (uri (cran-uri "deconstructSigs" version))
-              (sha256
-               (base32
-                "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
-    (properties
-     `((upstream-name . "deconstructSigs")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-bsgenome" ,r-bsgenome)
-       ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
-       ("r-genomeinfodb" ,r-genomeinfodb)
-       ("r-reshape2" ,r-reshape2)))
-    (home-page "https://github.com/raerose01/deconstructSigs";)
-    (synopsis "Identifies signatures present in a tumor sample")
-    (description "This package takes sample information in the form of the
-fraction of mutations in each of 96 trinucleotide contexts and identifies
-the weighted combination of published signatures that, when summed, most
-closely reconstructs the mutational profile.")
-    (license license:gpl2+)))
-
 ;; This is a CRAN package, but it depends on Bioconductor packages.
 (define-public r-nmf
   (package
@@ -1289,6 +1261,34 @@ and evaluate clustering results.")
 arbitrary genomic intervals along chromosomal ideogram.")
     (license license:gpl2)))
 
+;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
+;; from Bioconductor.
+(define-public r-deconstructsigs
+  (package
+    (name "r-deconstructsigs")
+    (version "1.8.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "deconstructSigs" version))
+              (sha256
+               (base32
+                "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
+    (properties
+     `((upstream-name . "deconstructSigs")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)
+       ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-reshape2" ,r-reshape2)))
+    (home-page "https://github.com/raerose01/deconstructSigs";)
+    (synopsis "Identifies signatures present in a tumor sample")
+    (description "This package takes sample information in the form of the
+fraction of mutations in each of 96 trinucleotide contexts and identifies
+the weighted combination of published signatures that, when summed, most
+closely reconstructs the mutational profile.")
+    (license license:gpl2+)))
+
 (define-public r-affycomp
   (package
     (name "r-affycomp")