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187/323: gnu: Add r-biocio.
From: |
guix-commits |
Subject: |
187/323: gnu: Add r-biocio. |
Date: |
Wed, 9 Dec 2020 06:47:16 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit ff4834c065a3b0d90021fbbba2f8306ade9ce691
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Thu Dec 3 14:33:05 2020 +0100
gnu: Add r-biocio.
* gnu/packages/bioconductor.scm (r-biocio): New variable.
---
gnu/packages/bioconductor.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6adce25..a854fef 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8867,3 +8867,39 @@ etc.), missing data imputation, data normalisation
(quantiles, vsn, etc.) as
well as misc helper functions, that are used across high-level data structure
within the R for Mass Spectrometry packages.")
(license license:artistic2.0)))
+
+(define-public r-biocio
+ (package
+ (name "r-biocio")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiocIO" version))
+ (sha256
+ (base32
+ "06gg5ra3r7q4b6mz14c2s9d453cnh1lxh517ffl9f8dr8vwv5s18"))))
+ (properties `((upstream-name . "BiocIO")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rcurl" ,r-rcurl)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/BiocIO")
+ (synopsis "Standard input and output for Bioconductor packages")
+ (description
+ "This package implements `import()` and `export()` standard generics for
+importing and exporting biological data formats. `import()` supports
+whole-file as well as chunk-wise iterative import. The `import()` interface
+optionally provides a standard mechanism for 'lazy' access via `filter()` (on
+row or element-like components of the file resource), `select()` (on
+column-like components of the file resource) and `collect()`. The `import()`
+interface optionally provides transparent access to remote (e.g. via https)
+as well as local access. Developers can register a file extension, e.g.,
+`.loom` for dispatch from character-based URIs to specific `import()` /
+`export()` methods based on classes representing file types, e.g.,
+`LoomFile()`.")
+ (license license:artistic2.0)))
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- 152/323: gnu: r-genie3: Update to 1.12.0., guix-commits, 2020/12/09
- 155/323: gnu: r-seqbias: Update to 1.38.0., guix-commits, 2020/12/09
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- 160/323: gnu: r-variancepartition: Update to 1.20.0., guix-commits, 2020/12/09
- 172/323: gnu: r-bigmemoryextras: Update to 1.38.0., guix-commits, 2020/12/09
- 179/323: gnu: r-ebarrays: Update to 2.54.0., guix-commits, 2020/12/09
- 196/323: gnu: r-rgraphviz: Update to 2.34.0., guix-commits, 2020/12/09
- 203/323: gnu: Add r-matrixgenerics., guix-commits, 2020/12/09
- 187/323: gnu: Add r-biocio.,
guix-commits <=
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