branch master updated (533935c -> ebf11de)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 533935c  services: science.scm: Add missing copyright headers.
     new 0a79b24  import: cran: Update the Bioconductor version to 3.12.
     new 25f4e65  gnu: r-ideoviz: Update to 1.26.0.
     new 5ef637d  gnu: r-coverageview: Update to 1.28.0.
     new a3e2e53  gnu: r-cummerbund: Update to 2.32.0.
     new 70ab990  gnu: r-biocversion: Update to 3.12.0.
     new aa311ea  gnu: r-biocgenerics: Update to 0.36.0.
     new c472549  gnu: r-affycomp: Update to 1.66.0.
     new fa2d16c  gnu: r-affycompatible: Update to 1.50.0.
     new 3e82f9c  gnu: r-affycontam: Update to 1.48.0.
     new a92219b  gnu: r-affycoretools: Update to 1.62.0.
     new 8e6a2c3  gnu: r-affxparser: Update to 1.62.0.
     new 7d56302  gnu: r-annotate: Update to 1.68.0.
     new fa7578b  gnu: r-hpar: Update to 1.32.1.
     new d1ff360  gnu: r-regioner: Update to 1.22.0.
     new c03c763  gnu: r-reportingtools: Update to 2.30.0.
     new d72c4c9  gnu: r-geneplotter: Update to 1.68.0.
     new 464df5c  gnu: r-oligoclasses: Update to 1.52.0.
     new 9af6fdf  gnu: r-oligo: Update to 1.54.0.
     new e9b60a2  gnu: r-qvalue: Update to 2.22.0.
     new a0df9b9  gnu: Add r-rcppnumerical.
     new 3b399e5  gnu: Add r-apeglm.
     new a7f4a8b  gnu: Add r-invgamma.
     new deda231  gnu: Add r-etrunct.
     new 755d16a  gnu: Add r-mixsqp.
     new c84762c  gnu: Add r-ashr.
     new 6e396c4  gnu: Add r-greylistchip.
     new 341ebaa  gnu: r-diffbind: Update to 3.0.7.
     new 1e6920c  gnu: r-multtest: Update to 2.46.0.
     new f519b4d  gnu: r-graph: Update to 1.68.0.
     new d068d96  gnu: r-chippeakanno: Update to 3.24.0.
     new 6e6c627  gnu: r-marray: Update to 1.68.0.
     new ee052d0  gnu: r-cghbase: Update to 1.50.0.
     new 7240003  gnu: r-cghcall: Update to 2.52.0.
     new 3b64840  gnu: r-qdnaseq: Update to 1.26.0.
     new 63572b0  gnu: r-bayseq: Update to 2.24.0.
     new 03b655c  gnu: r-riboprofiling: Update to 1.20.0.
     new 3813c9f  gnu: r-riboseqr: Update to 1.24.0.
     new d27dfbf  gnu: r-ctc: Update to 1.64.0.
     new c97bcfb  gnu: r-goseq: Update to 1.42.0.
     new 3dab457  gnu: r-glimma: Update to 2.0.0.
     new 0ef40b2  gnu: r-rots: Update to 1.18.0.
     new 1c9bdfc  gnu: r-plgem: Update to 1.62.0.
     new 41d6b41  gnu: r-inspect: Update to 1.20.0.
     new 874a774  gnu: r-dnabarcodes: Update to 1.20.0.
     new a55b162  gnu: r-ruvseq: Update to 1.24.0.
     new bbae34a  gnu: r-biocneighbors: Update to 1.8.0.
     new 4217307  gnu: r-destiny: Update to 3.4.0.
     new 967fc58  gnu: r-savr: Update to 1.28.0.
     new ff4d080  gnu: r-chipexoqual: Update to 1.14.0.
     new 43d8db0  gnu: r-copynumber: Update to 1.30.0.
     new 850f4c2  gnu: r-dnacopy: Update to 1.64.0.
     new 939c888  gnu: r-ebseq: Update to 1.30.0.
     new 37da451  gnu: r-karyoploter: Update to 1.16.0.
     new 378d67c  gnu: r-lpsymphony: Update to 1.18.0.
     new 95b1f35  gnu: r-ihw: Update to 1.18.0.
     new e26b5ee  gnu: r-icobra: Update to 1.18.0.
     new 532b106  gnu: r-mast: Update to 1.16.0.
     new 38bc0bf  gnu: r-monocle: Update to 2.18.0.
     new 8396c45  gnu: r-noiseq: Update to 2.34.0.
     new bde9dc5  gnu: r-scone: Update to 1.14.0.
     new 5c4edee  gnu: r-geoquery: Update to 2.58.0.
     new e89966e  gnu: r-illuminaio: Update to 0.32.0.
     new 0fd830f  gnu: r-siggenes: Update to 1.64.0.
     new 50c5fee  gnu: r-bumphunter: Update to 1.32.0.
     new 37e0961  gnu: r-linnorm: Update to 2.14.0.
     new 2a1a6d7  gnu: r-ioniser: Update to 2.14.0.
     new 67837d4  gnu: r-varianttools: Update to 1.32.0.
     new 9813d24  gnu: r-heatplus: Update to 2.36.0.
     new b2084e4  gnu: r-gosemsim: Update to 2.16.1.
     new 33c905b  gnu: r-anota: Update to 1.38.0.
     new 7dabc62  gnu: r-sigpathway: Update to 1.58.0.
     new d68a9ff  gnu: r-fgsea: Update to 1.16.0.
     new aeb1d56  gnu: r-dose: Update to 3.16.0.
     new b7d1ea7  gnu: Add r-shadowtext.
     new eb3d17e  gnu: r-enrichplot: Update to 1.10.1.
     new 3fd84a4  gnu: r-clusterprofiler: Update to 3.18.0.
     new 4f82931  gnu: r-mlinterfaces: Update to 1.70.0.
     new c47a8cd  gnu: r-a4core: Update to 1.38.0.
     new fa51705  gnu: r-a4classif: Update to 1.38.0.
     new 85155e2  gnu: r-a4preproc: Update to 1.38.0.
     new 2fb8298  gnu: r-a4reporting: Update to 1.38.0.
     new 564d427  gnu: r-a4base: Update to 1.38.0.
     new 68efaaf  gnu: r-a4: Update to 1.38.0.
     new 8816139  gnu: r-abseqr: Update to 1.8.0.
     new d5dcf1b  gnu: r-bacon: Update to 1.18.0.
     new 41071ed  gnu: r-rgadem: Update to 2.38.0.
     new a2bae16  gnu: r-motifdb: Update to 1.32.0.
     new 301e549  gnu: r-motifbreakr: Update to 2.4.0.
     new 4b4cd2b  gnu: r-motifstack: Update to 1.34.0.
     new 3928061  gnu: r-genomicscores: Update to 2.2.0.
     new 2ba61c6  gnu: r-atacseqqc: Update to 1.14.4.
     new c3b69d6  gnu: r-gofuncr: Update to 1.10.0.
     new 8a7f711  gnu: r-abaenrichment: Update to 1.20.0.
     new bc12a4b  gnu: r-annotationfuncs: Update to 1.40.0.
     new 5779154  gnu: r-annotationtools: Update to 1.64.0.
     new 85c6636  gnu: r-allelicimbalance: Update to 1.28.0.
     new ff8b915  gnu: r-aucell: Update to 1.12.0.
     new ba0bf98  gnu: r-ebimage: Update to 4.32.0.
     new 65ba4ba  gnu: r-yamss: Update to 1.16.0.
     new 0836ef6  gnu: r-gtrellis: Update to 1.22.0.
     new 36f3a19  gnu: r-somaticsignatures: Update to 2.26.0.
     new 3d41f0c  gnu: r-gcrma: Update to 2.62.0.
     new 48aaef2  gnu: r-simpleaffy: Update to 2.66.0.
     new 94dee0a  gnu: r-yaqcaffy: Update to 1.50.0.
     new 72476ad  gnu: r-roar: Update to 1.26.0.
     new 7f71341  gnu: r-xbseq: Update to 1.22.0.
     new f4e19e6  gnu: r-massspecwavelet: Update to 1.56.0.
     new 1e536c3  gnu: Update r-msnbase to 2.16.0.
     new fa2201c  gnu: Add r-mscoreutils.
     new a3af40e  gnu: r-xcms: Update to 3.12.0.
     new dc7c636  gnu: r-wrench: Update to 1.8.0.
     new 397bcd2  gnu: r-wiggleplotr: Update to 1.14.0.
     new ba53681  gnu: r-widgettools: Update to 1.68.0.
     new d176ad3  gnu: r-webbioc: Update to 1.62.0.
     new 59fafa1  gnu: r-zfpkm: Update to 1.12.0.
     new 9834d1a  gnu: r-rbowtie2: Update to 1.12.0.
     new d115db7  gnu: r-progeny: Update to 1.12.0.
     new 0067589  gnu: r-arrmnormalization: Update to 1.30.0.
     new e65e81d  gnu: r-biocfilecache: Update to 1.14.0.
     new 4bc0675  gnu: r-iclusterplus: Update to 1.26.0.
     new ea86d93  gnu: r-rbowtie: Update to 1.30.0.
     new ca0271c  gnu: r-sgseq: Update to 1.24.0.
     new c36d888  gnu: r-rhisat2: Update to 1.6.0.
     new 1b4c271  gnu: r-quasr: Update to 1.30.0.
     new d8a7bf7  gnu: r-rqc: Update to 1.24.0.
     new 979b1ed  gnu: r-birewire: Update to 3.22.0.
     new e78e04d  gnu: r-multidataset: Update to 1.18.0.
     new 59daf6e  gnu: r-ropls: Update to 1.22.0.
     new 26e4170  gnu: r-biosigner: Update to 1.18.0.
     new 458aa44  gnu: r-annotatr: Update to 1.16.0.
     new d764f1e  gnu: r-rsubread: Update to 2.4.2.
     new d361222  gnu: r-flowutils: Update to 1.54.0.
     new a49024e  gnu: r-consensusclusterplus: Update to 1.54.0.
     new c6ccd4f  gnu: r-cytolib: Update to 2.2.0.
     new 3f0e93b  gnu: r-flowcore: Update to 2.2.0.
     new 2cd7813  gnu: r-flowmeans: Update to 1.50.0.
     new eac1eaa  gnu: r-ncdfflow: Update to 2.36.0.
     new d5a53ab  gnu: r-flowviz: Update to 1.54.0.
     new 33c5b6d  gnu: r-flowclust: Update to 3.28.0.
     new 5bab0b7  gnu: r-rprotobuflib: Update to 2.2.0.
     new 7f940bd  gnu: Add r-aws-signature.
     new ffa42c7  gnu: Add r-aws-s3.
     new 1b34781  gnu: r-flowworkspace: Update to 4.2.0.
     new fd11c7b  gnu: r-flowstats: Update to 4.2.0.
     new 5abf0a0  gnu: r-opencyto: Update to 2.2.0.
     new 63033b1  gnu: r-cytoml: Update to 2.2.1.
     new 1f7ddaf  gnu: r-flowsom: Update to 1.22.0.
     new 0e78ce3  gnu: r-mixomics: Update to 6.14.0.
     new fafaeab  gnu: r-depecher: Update to 1.6.0.
     new 6481357  gnu: r-rcistarget: Update to 1.10.0.
     new 7954fe1  gnu: r-cicero: Update to 1.8.0.
     new 5d1bd61  gnu: r-genie3: Update to 1.12.0.
     new e7b61ba  gnu: r-roc: Update to 1.66.0.
     new a50779b  gnu: r-gdsfmt: Update to 1.26.0.
     new 42e00c0  gnu: r-seqbias: Update to 1.38.0.
     new 0c53f27  gnu: r-reqon: Update to 1.36.0.
     new fd7e23b  gnu: r-wavcluster: Update to 2.24.0.
     new 87f704b  gnu: r-timeseriesexperiment: Update to 1.8.0.
     new 45ea773  gnu: r-variantfiltering: Update to 1.26.0.
     new 44ecd5f  gnu: r-variancepartition: Update to 1.20.0.
     new 949626f  gnu: r-htqpcr: Update to 1.44.0.
     new fa7e242  gnu: r-unifiedwmwqpcr: Update to 1.26.0.
     new fad5da3  gnu: r-bgmix: Update to 1.50.0.
     new 3cebe27  gnu: r-bgx: Update to 1.56.0.
     new 2219bef  gnu: r-bhc: Update to 1.42.0.
     new 4ec6656  gnu: r-bicare: Update to 1.48.0.
     new d57be63  gnu: r-bifet: Update to 1.10.0.
     new 3320f04  gnu: r-rsbml: Update to 2.48.0.
     new 294fd58  gnu: r-hypergraph: Update to 1.62.0.
     new 249b703  gnu: r-hyperdraw: Update to 1.42.0.
     new 0f94a9e  gnu: r-biggr: Update to 1.26.0.
     new e80f826  gnu: r-bigmemoryextras: Update to 1.38.0.
     new 1e28867  gnu: r-bigpint: Update to 1.6.0.
     new 95ef268  gnu: r-chemminer: Update to 3.42.0.
     new 2f36b04  gnu: r-bioassayr: Update to 1.28.0.
     new 95e30d8  gnu: r-biobroom: Update to 1.22.0.
     new 26224e0  gnu: r-graphite: Update to 1.36.0.
     new a4f4a55  gnu: r-reactomepa: Update to 1.34.0.
     new b0f3bfe  gnu: r-ebarrays: Update to 2.54.0.
     new 7dced9a  gnu: r-bioccasestudies: Update to 1.52.0.
     new abc18fc  gnu: r-biocgraph: Update to 1.52.0.
     new 49a7285  gnu: r-experimenthub: Update to 1.16.0.
     new 13d0b78  gnu: r-multiassayexperiment: Update to 1.16.0.
     new e29b15e  gnu: r-bioconcotk: Update to 1.10.0.
     new 072f722  gnu: r-biocor: Update to 1.14.0.
     new 6a5d8ca  gnu: r-biocpkgtools: Update to 1.8.0.
     new ff4834c  gnu: Add r-biocio.
     new feb0cbf  gnu: r-biocset: Update to 1.4.0.
     new 7891c83  gnu: r-biocworkflowtools: Update to 1.16.0.
     new 15be98c  gnu: r-biodist: Update to 1.62.0.
     new 7a24204  gnu: r-rgreat: Update to 1.22.0.
     new 126846a  gnu: r-m3c: Update to 1.12.0.
     new 3cacc3b  gnu: r-icens: Update to 1.62.0.
     new e5b2c80  gnu: r-fourcseq: Update to 1.24.0.
     new 8fa30df  gnu: r-preprocesscore: Update to 1.52.0.
     new b6348b0  gnu: r-rgraphviz: Update to 2.34.0.
     new 724b770  gnu: r-xvector: Update to 0.30.0.
     new 7105658  gnu: r-fithic: Update to 1.16.0.
     new ed44a72  gnu: r-hitc: Update to 1.34.0.
     new 5782047  gnu: r-s4vectors: Update to 0.28.0.
     new cf6033e  gnu: r-iranges: Update to 2.24.0.
     new 47f6fd8  gnu: Add r-ggalluvial.
     new c8da013  gnu: Add r-matrixgenerics.
     new fafa94b  gnu: r-delayedarray: Update to 0.16.0.
     new 5992c25  gnu: r-hdf5array: Update to 1.18.0.
     new 79cb6af  gnu: r-rhdf5lib: Update to 1.12.0.
     new c5ae5c1  gnu: r-rhdf5lib: Fix build.
     new b58c4e7  gnu: r-cytolib: Fix r-rhdf5libs linking.
     new 26cf5eb  gnu: r-hdf5array: Fix r-rhdf5libs linking.
     new ece564f  gnu: r-flowworkspace: Fix r-rhdf5libs linking.
     new 2b224f9  gnu: r-cytoml: Fix r-rhdf5libs linking.
     new 0022e9f  gnu: r-ncdfflow: Fix r-rhdf5libs link.
     new fe4ce29  gnu: r-beachmat: Update to 2.6.1.
     new 64cf667  gnu: r-genefilter: Update to 1.72.0.
     new 936227f  gnu: r-deseq2: Update to 1.30.0.
     new a323c1e  gnu: r-dexseq: Update to 1.36.0.
     new 4451918  gnu: r-annotationforge: Update to 1.32.0.
     new 7a57b22  gnu: r-rbgl: Update to 1.66.0.
     new 03312f0  gnu: r-gseabase: Update to 1.52.0.
     new afbc8e1  gnu: r-category: Update to 2.56.0.
     new 74204b4  gnu: r-gostats: Update to 2.56.0.
     new a05bb42  gnu: r-shortread: Update to 1.48.0.
     new 5598f53  gnu: r-systempiper: Update to 1.24.2.
     new 16a4822  gnu: r-grohmm: Update to 1.24.0.
     new 182a080  gnu: r-biocviews: Update to 1.58.0.
     new 1160c83  gnu: r-biocstyle: Update to 2.18.0.
     new 2ae3b7d  gnu: r-bioccheck: Update to 1.26.0.
     new cde7fce  gnu: r-genomeinfodb: Update to 1.26.0.
     new 5996929  gnu: r-edger: Update to 3.32.0.
     new d972ab6  gnu: r-limma: Update to 3.46.0.
     new 7641dba  gnu: r-genomicranges: Update to 1.42.0.
     new 9103041  gnu: r-biobase: Update to 2.50.0.
     new f517365  gnu: r-annotationdbi: Update to 1.52.0.
     new 4fac3fe  gnu: r-biomart: Update to 2.46.0.
     new 444b101  gnu: r-biocparallel: Update to 1.24.1.
     new 5d60273  gnu: r-biostrings: Update to 2.58.0.
     new 9168ab0  gnu: r-rsamtools: Update to 2.6.0.
     new 8607a53  gnu: r-summarizedexperiment: Update to 1.20.0.
     new 3ca5b05  gnu: r-variantannotation: Update to 1.36.0.
     new 077e813  gnu: r-genomicalignments: Update to 1.26.0.
     new 92377e7  gnu: r-rtracklayer: Update to 1.50.0.
     new 26e2184  gnu: r-genomicfeatures: Update to 1.42.1.
     new 6a7de43  gnu: r-topgo: Update to 2.42.0.
     new e2e11f0  gnu: r-bsgenome: Update to 1.58.0.
     new a180744  gnu: r-impute: Update to 1.64.0.
     new 44bf116  gnu: r-seqpattern: Update to 1.22.0.
     new 2a70c96  gnu: r-genomation: Update to 1.22.0.
     new 329879b  gnu: r-seqlogo: Update to 1.56.0.
     new b0d85e3  gnu: r-zlibbioc: Update to 1.36.0.
     new 7283696  gnu: r-rhtslib: Update to 1.22.0.
     new 2c15a1c  gnu: r-bamsignals: Update to 1.22.0.
     new a823a74  gnu: r-rcas: Update to 1.16.0.
     new 6d5a4dd  gnu: r-mutationalpatterns: Update to 3.0.1.
     new ec0050c  gnu: r-tximport: Update to 1.18.0.
     new cad3eb4  gnu: r-annotationfilter: Update to 1.14.0.
     new 36fd725  gnu: r-chipseq: Update to 1.40.0.
     new 2ed79a0  gnu: r-copywriter: Update to 2.22.0.
     new 99bd4f2  gnu: r-methylkit: Update to 1.16.0.
     new 858eb98  gnu: r-sva: Update to 3.38.0.
     new 4d9e168  gnu: r-protgenerics: Update to 1.22.0.
     new badb467  gnu: r-mzr: Update to 2.24.1.
     new 471ceb5  gnu: r-mzr: Fix linking.
     new d6750c6  gnu: r-affyio: Update to 1.60.0.
     new 6a6f38b  gnu: r-affy: Update to 1.68.0.
     new 75bdab8  gnu: r-vsn: Update to 3.58.0.
     new b47560c  gnu: r-mzid: Update to 1.28.0.
     new 2ed937e  gnu: r-pcamethods: Update to 1.82.0.
     new e520c68  gnu: Add r-msmseda.
     new 16f16b5  gnu: Add r-msmstests.
     new 971f3a3  gnu: r-msnid: Update to 1.24.0.
     new 8db8a68  gnu: r-aroma-light: Update to 3.20.0.
     new 8e55b9f  gnu: r-edaseq: Update to 2.24.0.
     new 3becce3  gnu: r-interactivedisplaybase: Update to 1.28.0.
     new a9dc755  gnu: r-annotationhub: Update to 2.22.0.
     new b6dd072  gnu: r-fastseg: Update to 1.36.0.
     new 143437c  gnu: r-keggrest: Update to 1.30.0.
     new 78cadd0  gnu: r-gage: Update to 2.40.0.
     new 0fde2f9  gnu: r-genomicfiles: Update to 1.26.0.
     new 4ef1e37  gnu: r-complexheatmap: Update to 2.6.2.
     new 8962a13  gnu: r-dirichletmultinomial: Update to 1.32.0.
     new 06fe3b7  gnu: r-ensembldb: Update to 2.14.0.
     new 6e182c2  gnu: r-organismdbi: Update to 1.32.0.
     new 3c6eecd  gnu: r-biovizbase: Update to 1.38.0.
     new 74a11b2  gnu: r-ggbio: Update to 1.38.0.
     new 6e33890  gnu: r-snpstats: Update to 1.40.0.
     new 494010a  gnu: r-erma: Update to 1.6.0.
     new 0a8d08e  gnu: r-ldblock: Update to 1.20.0.
     new 717e53f  gnu: r-gviz: Update to 1.34.0.
     new 83129ed  gnu: r-gwascat: Update to 2.22.0.
     new e707820  gnu: r-sushi: Update to 1.28.0.
     new aca4ebe  gnu: r-annaffy: Update to 1.62.0.
     new a23310f  gnu: Add r-bluster.
     new 5e71998  gnu: Add r-sparsematrixstats.
     new 60ad3c7  gnu: r-genomationdata: Update to 1.22.0.
     new 35dae95  gnu: r-interactionset: Update to 1.18.0.
     new dd9341f  gnu: r-genomicinteractions: Update to 1.24.0.
     new 798ec28  gnu: r-biocsingular: Update to 1.6.0.
     new d0db04f  gnu: r-yapsa: Update to 1.16.0.
     new 4ef898d  gnu: r-singlecellexperiment: Update to 1.12.0.
     new 86fccee  gnu: Add r-rhdf5filters.
     new 53affb3  gnu: r-rhdf5: Update to 2.34.0.
     new 10c87ec  gnu: r-delayedmatrixstats: Update to 1.12.0.
     new 0e60dda  gnu: Add r-scuttle.
     new d4b5d18  gnu: r-scater: Update to 1.18.3.
     new b03c955  gnu: r-scran: Update to 1.18.0.
     new 9709842  gnu: r-biocviews: Update to 1.58.1.
     new 1174317  gnu: r-pcatools: Update to 2.2.0.
     new 3f04b81  gnu: r-chipcomp: Update to 1.20.0.
     new b856a48  gnu: r-scdd: Update to 1.14.0.
     new 43bf50e  gnu: r-ggcyto: Update to 1.18.0.
     new 45dfb75  gnu: Add r-catalyst.
     new e5a4198  gnu: r-minfi: Update to 1.36.0.
     new 0b7dd44  gnu: r-methylumi: Update to 2.36.0.
     new 4eeaa15  gnu: r-lumi: Update to 2.42.0.
     new adf6edc  gnu: r-quantro: Update to 1.24.0.
     new 8db36c1  gnu: r-yarn: Update to 1.16.0.
     new 9f6e2bf  gnu: r-watermelon: Update to 1.34.0.
     new 64f9fb3  gnu: r-bigmelon: Update to 1.16.0.
     new 6a48187  gnu: r-gqtlbase: Update to 1.21.1.
     new cde035e  gnu: r-gqtlstats: Update to 1.21.3.
     new 7601015  gnu: r-delayedmatrixstats: Update to 1.12.1.
     new 4617cc7  gnu: r-rhtslib: Propagate zlib.
     new ebf11de  gnu: r-diffbind: Update to 3.0.8.

The 323 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   | 1381 ++++++++++++++++++++++++++-------------
 gnu/packages/bioinformatics.scm |  478 ++++++++------
 gnu/packages/cran.scm           |  201 ++++++
 guix/build-system/r.scm         |    2 +-
 guix/import/cran.scm            |    4 +-
 5 files changed, 1389 insertions(+), 677 deletions(-)