branch wip-r created (now 74a8f79)

[guix-commits]

rekado pushed a change to branch wip-r
in repository guix.

      at 74a8f79  gnu: r-diffbind: Update to 3.0.8.

This branch includes the following new commits:

     new f301ced  import: cran: Update the Bioconductor version to 3.12.
     new b90e9c9  gnu: r-ideoviz: Update to 1.26.0.
     new d4d7df5  gnu: r-coverageview: Update to 1.28.0.
     new b40f3df  gnu: r-cummerbund: Update to 2.32.0.
     new 00fd914  gnu: r-biocversion: Update to 3.12.0.
     new 994c04c  gnu: r-biocgenerics: Update to 0.36.0.
     new ff83974  gnu: r-affycomp: Update to 1.66.0.
     new b8680a1  gnu: r-affycompatible: Update to 1.50.0.
     new fc55ccb  gnu: r-affycontam: Update to 1.48.0.
     new 1722e64  gnu: r-affycoretools: Update to 1.62.0.
     new 24aef46  gnu: r-affxparser: Update to 1.62.0.
     new 6de4ea9  gnu: r-annotate: Update to 1.68.0.
     new 9307b49  gnu: r-hpar: Update to 1.32.1.
     new 058a14d  gnu: r-regioner: Update to 1.22.0.
     new 8aea718  gnu: r-reportingtools: Update to 2.30.0.
     new 9af5502  gnu: r-geneplotter: Update to 1.68.0.
     new a1d585e  gnu: r-oligoclasses: Update to 1.52.0.
     new dbe0858  gnu: r-oligo: Update to 1.54.0.
     new f779259  gnu: r-qvalue: Update to 2.22.0.
     new 83ed0a7  gnu: Add r-rcppnumerical.
     new 7ebf7eb  gnu: Add r-apeglm.
     new 6c5cd33  gnu: Add r-invgamma.
     new 59d4c77  gnu: Add r-etrunct.
     new dfe49dc5 gnu: Add r-mixsqp.
     new 309e30d  gnu: Add r-ashr.
     new 64f15cb  gnu: Add r-greylistchip.
     new 7530323  gnu: r-diffbind: Update to 3.0.7.
     new 92eb04e  gnu: r-multtest: Update to 2.46.0.
     new 601efc3  gnu: r-graph: Update to 1.68.0.
     new 28c08f9  gnu: r-chippeakanno: Update to 3.24.0.
     new 1ed2431  gnu: r-marray: Update to 1.68.0.
     new cc27dac  gnu: r-cghbase: Update to 1.50.0.
     new 34c1cf7  gnu: r-cghcall: Update to 2.52.0.
     new 8b8c2e8  gnu: r-qdnaseq: Update to 1.26.0.
     new 3ace3d9  gnu: r-bayseq: Update to 2.24.0.
     new 501fce8  gnu: r-riboprofiling: Update to 1.20.0.
     new 438f3f6  gnu: r-riboseqr: Update to 1.24.0.
     new bfa888a  gnu: r-ctc: Update to 1.64.0.
     new 9a91790  gnu: r-goseq: Update to 1.42.0.
     new a4b99d5  gnu: r-glimma: Update to 2.0.0.
     new 0c756ea  gnu: r-rots: Update to 1.18.0.
     new 0e688cf  gnu: r-plgem: Update to 1.62.0.
     new b730a65  gnu: r-inspect: Update to 1.20.0.
     new 1f0a721  gnu: r-dnabarcodes: Update to 1.20.0.
     new e355f24  gnu: r-ruvseq: Update to 1.24.0.
     new c203fed  gnu: r-biocneighbors: Update to 1.8.0.
     new 02df3c4  gnu: r-destiny: Update to 3.4.0.
     new 4396847  gnu: r-savr: Update to 1.28.0.
     new ea0e550  gnu: r-chipexoqual: Update to 1.14.0.
     new e07b562  gnu: r-copynumber: Update to 1.30.0.
     new 122b4c6  gnu: r-dnacopy: Update to 1.64.0.
     new 8b528d1  gnu: r-ebseq: Update to 1.30.0.
     new 31943d0  gnu: r-karyoploter: Update to 1.16.0.
     new b56e1bd  gnu: r-lpsymphony: Update to 1.18.0.
     new d6e2da1  gnu: r-ihw: Update to 1.18.0.
     new 38343f3  gnu: r-icobra: Update to 1.18.0.
     new d145db7  gnu: r-mast: Update to 1.16.0.
     new 5fae949  gnu: r-monocle: Update to 2.18.0.
     new f117eb6  gnu: r-noiseq: Update to 2.34.0.
     new d03682c  gnu: r-scone: Update to 1.14.0.
     new 0d44d86  gnu: r-geoquery: Update to 2.58.0.
     new 9da0e95  gnu: r-illuminaio: Update to 0.32.0.
     new 2295e1e  gnu: r-siggenes: Update to 1.64.0.
     new 3c59bbc  gnu: r-bumphunter: Update to 1.32.0.
     new 60c38a2  gnu: r-linnorm: Update to 2.14.0.
     new cd3de26  gnu: r-ioniser: Update to 2.14.0.
     new 6c9e9a6  gnu: r-varianttools: Update to 1.32.0.
     new 741ae6c  gnu: r-heatplus: Update to 2.36.0.
     new ec4c826  gnu: r-gosemsim: Update to 2.16.1.
     new 927a591  gnu: r-anota: Update to 1.38.0.
     new 0715b37  gnu: r-sigpathway: Update to 1.58.0.
     new a2d9e02  gnu: r-fgsea: Update to 1.16.0.
     new c1c760a  gnu: r-dose: Update to 3.16.0.
     new febce03  gnu: Add r-shadowtext.
     new 2ccacb0  gnu: r-enrichplot: Update to 1.10.1.
     new 0a80afa  gnu: r-clusterprofiler: Update to 3.18.0.
     new 1eaa988  gnu: r-mlinterfaces: Update to 1.70.0.
     new c514081  gnu: r-a4core: Update to 1.38.0.
     new 4487367  gnu: r-a4classif: Update to 1.38.0.
     new 547f706  gnu: r-a4preproc: Update to 1.38.0.
     new 56579f5  gnu: r-a4reporting: Update to 1.38.0.
     new 4c9f321  gnu: r-a4base: Update to 1.38.0.
     new 6f64245  gnu: r-a4: Update to 1.38.0.
     new 0d4d5e6  gnu: r-abseqr: Update to 1.8.0.
     new 91e7b9e  gnu: r-bacon: Update to 1.18.0.
     new 4359884  gnu: r-rgadem: Update to 2.38.0.
     new afda5ba  gnu: r-motifdb: Update to 1.32.0.
     new d2b5d1c  gnu: r-motifbreakr: Update to 2.4.0.
     new f6c298a  gnu: r-motifstack: Update to 1.34.0.
     new f8d6416  gnu: r-genomicscores: Update to 2.2.0.
     new 88e9e79  gnu: r-atacseqqc: Update to 1.14.4.
     new 15c9057  gnu: r-gofuncr: Update to 1.10.0.
     new 21f6a62  gnu: r-abaenrichment: Update to 1.20.0.
     new 4f9b3a0  gnu: r-annotationfuncs: Update to 1.40.0.
     new 516d852  gnu: r-annotationtools: Update to 1.64.0.
     new 0cad80b  gnu: r-allelicimbalance: Update to 1.28.0.
     new 0101d43  gnu: r-aucell: Update to 1.12.0.
     new 4be9dad  gnu: r-ebimage: Update to 4.32.0.
     new 645d998  gnu: r-yamss: Update to 1.16.0.
     new 5296a76  gnu: r-gtrellis: Update to 1.22.0.
     new 92aed54  gnu: r-somaticsignatures: Update to 2.26.0.
     new e6127b4  gnu: r-gcrma: Update to 2.62.0.
     new 21d8204  gnu: r-simpleaffy: Update to 2.66.0.
     new 8578562  gnu: r-yaqcaffy: Update to 1.50.0.
     new 369f8e3  gnu: r-roar: Update to 1.26.0.
     new 7e03392  gnu: r-xbseq: Update to 1.22.0.
     new a1640be  gnu: r-massspecwavelet: Update to 1.56.0.
     new f57e8cb  gnu: Update r-msnbase to 2.16.0.
     new 2955534  gnu: Add r-mscoreutils.
     new 9b253cf  gnu: r-xcms: Update to 3.12.0.
     new 65fe311  gnu: r-wrench: Update to 1.8.0.
     new 322b6f5  gnu: r-wiggleplotr: Update to 1.14.0.
     new 4bfa96e  gnu: r-widgettools: Update to 1.68.0.
     new 82a03a4  gnu: r-webbioc: Update to 1.62.0.
     new 11030d3  gnu: r-zfpkm: Update to 1.12.0.
     new 6f46402  gnu: r-rbowtie2: Update to 1.12.0.
     new 53c31dc  gnu: r-progeny: Update to 1.12.0.
     new 4e5b3b6  gnu: r-arrmnormalization: Update to 1.30.0.
     new 13f3e82  gnu: r-biocfilecache: Update to 1.14.0.
     new edfde72  gnu: r-iclusterplus: Update to 1.26.0.
     new 51706cb  gnu: r-rbowtie: Update to 1.30.0.
     new fda13bd  gnu: r-sgseq: Update to 1.24.0.
     new fe92fd6  gnu: r-rhisat2: Update to 1.6.0.
     new 3dc8c5d  gnu: r-quasr: Update to 1.30.0.
     new d442595  gnu: r-rqc: Update to 1.24.0.
     new 8de3e09  gnu: r-birewire: Update to 3.22.0.
     new 37a067b  gnu: r-multidataset: Update to 1.18.0.
     new 286197c  gnu: r-ropls: Update to 1.22.0.
     new 30ee7d8  gnu: r-biosigner: Update to 1.18.0.
     new 929f63a  gnu: r-annotatr: Update to 1.16.0.
     new 26bc84c  gnu: r-rsubread: Update to 2.4.2.
     new fe80eb5  gnu: r-flowutils: Update to 1.54.0.
     new ae00223  gnu: r-consensusclusterplus: Update to 1.54.0.
     new 8af4264  gnu: r-cytolib: Update to 2.2.0.
     new b06fa20  gnu: r-flowcore: Update to 2.2.0.
     new c155fbb  gnu: r-flowmeans: Update to 1.50.0.
     new 26ecf67  gnu: r-ncdfflow: Update to 2.36.0.
     new 475f7c4  gnu: r-flowviz: Update to 1.54.0.
     new 6f03824  gnu: r-flowclust: Update to 3.28.0.
     new 206c6b2  gnu: r-rprotobuflib: Update to 2.2.0.
     new 7db3a8f  gnu: Add r-aws-signature.
     new dd3ee77  gnu: Add r-aws-s3.
     new 230be05  gnu: r-flowworkspace: Update to 4.2.0.
     new 904d0cf  gnu: r-flowstats: Update to 4.2.0.
     new 46ffcda  gnu: r-opencyto: Update to 2.2.0.
     new d024e14  gnu: r-cytoml: Update to 2.2.1.
     new 21402a8  gnu: r-flowsom: Update to 1.22.0.
     new 7c27e06  gnu: r-mixomics: Update to 6.14.0.
     new 58671c3  gnu: r-depecher: Update to 1.6.0.
     new d5f5980  gnu: r-rcistarget: Update to 1.10.0.
     new 765c253  gnu: r-cicero: Update to 1.8.0.
     new becc673  gnu: r-genie3: Update to 1.12.0.
     new 56c1baf  gnu: r-roc: Update to 1.66.0.
     new 5d8bc64  gnu: r-gdsfmt: Update to 1.26.0.
     new 7667933  gnu: r-seqbias: Update to 1.38.0.
     new eece65c  gnu: r-reqon: Update to 1.36.0.
     new 4844cf2  gnu: r-wavcluster: Update to 2.24.0.
     new 3fdb9c5  gnu: r-timeseriesexperiment: Update to 1.8.0.
     new 9b71012  gnu: r-variantfiltering: Update to 1.26.0.
     new c28d98f  gnu: r-variancepartition: Update to 1.20.0.
     new abf4e62  gnu: r-htqpcr: Update to 1.44.0.
     new 4d35323  gnu: r-unifiedwmwqpcr: Update to 1.26.0.
     new d6c7f56  gnu: r-bgmix: Update to 1.50.0.
     new a8908cb  gnu: r-bgx: Update to 1.56.0.
     new a3f9510  gnu: r-bhc: Update to 1.42.0.
     new 6bcd50c  gnu: r-bicare: Update to 1.48.0.
     new 2218fe9  gnu: r-bifet: Update to 1.10.0.
     new cfa3ed8  gnu: r-rsbml: Update to 2.48.0.
     new fdcbd2e  gnu: r-hypergraph: Update to 1.62.0.
     new 40800b9  gnu: r-hyperdraw: Update to 1.42.0.
     new 4f5b55d  gnu: r-biggr: Update to 1.26.0.
     new e51dca4  gnu: r-bigmemoryextras: Update to 1.38.0.
     new e5c590d  gnu: r-bigpint: Update to 1.6.0.
     new 4dcd89e  gnu: r-chemminer: Update to 3.42.0.
     new 6dfdff7  gnu: r-bioassayr: Update to 1.28.0.
     new 2e0db35  gnu: r-biobroom: Update to 1.22.0.
     new fdd32ae  gnu: r-graphite: Update to 1.36.0.
     new 35444ec  gnu: r-reactomepa: Update to 1.34.0.
     new edfec36  gnu: r-ebarrays: Update to 2.54.0.
     new e6ef18d  gnu: r-bioccasestudies: Update to 1.52.0.
     new 852c391  gnu: r-biocgraph: Update to 1.52.0.
     new dbf1700  gnu: r-experimenthub: Update to 1.16.0.
     new 688160a  gnu: r-multiassayexperiment: Update to 1.16.0.
     new 5fee2f6  gnu: r-bioconcotk: Update to 1.10.0.
     new 3e8bd44  gnu: r-biocor: Update to 1.14.0.
     new 7de78b5  gnu: r-biocpkgtools: Update to 1.8.0.
     new f9345da  gnu: Add r-biocio.
     new 2d85e3d  gnu: r-biocset: Update to 1.4.0.
     new 2e0f06f  gnu: r-biocworkflowtools: Update to 1.16.0.
     new c71f8bf  gnu: r-biodist: Update to 1.62.0.
     new 7492688  gnu: r-rgreat: Update to 1.22.0.
     new 60cfb1b  gnu: r-m3c: Update to 1.12.0.
     new e7a79a4  gnu: r-icens: Update to 1.62.0.
     new 8e4284f  gnu: r-fourcseq: Update to 1.24.0.
     new 26b2539  gnu: r-preprocesscore: Update to 1.52.0.
     new 66b7f1a  gnu: r-rgraphviz: Update to 2.34.0.
     new 5f16aaf  gnu: r-xvector: Update to 0.30.0.
     new 79ba6f6  gnu: r-fithic: Update to 1.16.0.
     new eee1f6e  gnu: r-hitc: Update to 1.34.0.
     new 1730a37  gnu: r-s4vectors: Update to 0.28.0.
     new 7f948f6  gnu: r-iranges: Update to 2.24.0.
     new e3810ae  gnu: Add r-ggalluvial.
     new 31ce4a5  gnu: Add r-matrixgenerics.
     new 4994e26  gnu: r-delayedarray: Update to 0.16.0.
     new f615bd2  gnu: r-hdf5array: Update to 1.18.0.
     new 18847d8  gnu: r-rhdf5lib: Update to 1.12.0.
     new baa89ab  gnu: r-rhdf5lib: Fix build.
     new e8a7631  gnu: r-cytolib: Fix r-rhdf5libs linking.
     new 5f814c1  gnu: r-hdf5array: Fix r-rhdf5libs linking.
     new 87e9fb0  gnu: r-flowworkspace: Fix r-rhdf5libs linking.
     new 4421147  gnu: r-cytoml: Fix r-rhdf5libs linking.
     new 5624e99  gnu: r-ncdfflow: Fix r-rhdf5libs link.
     new 69d3f68  gnu: r-beachmat: Update to 2.6.1.
     new bbe0e01  gnu: r-genefilter: Update to 1.72.0.
     new 55075a7  gnu: r-deseq2: Update to 1.30.0.
     new d966ef1  gnu: r-dexseq: Update to 1.36.0.
     new 5cbde6f  gnu: r-annotationforge: Update to 1.32.0.
     new 516d2c4  gnu: r-rbgl: Update to 1.66.0.
     new 7b5f772  gnu: r-gseabase: Update to 1.52.0.
     new 37d87e1  gnu: r-category: Update to 2.56.0.
     new 9c52d41  gnu: r-gostats: Update to 2.56.0.
     new c18fd4d  gnu: r-shortread: Update to 1.48.0.
     new 962ea52  gnu: r-systempiper: Update to 1.24.2.
     new 46d2e58  gnu: r-grohmm: Update to 1.24.0.
     new 604f46e  gnu: r-biocviews: Update to 1.58.0.
     new 1b55205  gnu: r-biocstyle: Update to 2.18.0.
     new d3e7821  gnu: r-bioccheck: Update to 1.26.0.
     new 7c1c911  gnu: r-genomeinfodb: Update to 1.26.0.
     new c60b12a  gnu: r-edger: Update to 3.32.0.
     new 99b5d90  gnu: r-limma: Update to 3.46.0.
     new 1d19a57  gnu: r-genomicranges: Update to 1.42.0.
     new 5acfb32  gnu: r-biobase: Update to 2.50.0.
     new 075b115  gnu: r-annotationdbi: Update to 1.52.0.
     new 81b4a4c  gnu: r-biomart: Update to 2.46.0.
     new 0118c08  gnu: r-biocparallel: Update to 1.24.1.
     new 5511bcf  gnu: r-biostrings: Update to 2.58.0.
     new 836f02e  gnu: r-rsamtools: Update to 2.6.0.
     new 755ab71  gnu: r-summarizedexperiment: Update to 1.20.0.
     new 46a33b6  gnu: r-variantannotation: Update to 1.36.0.
     new 0b21ffc  gnu: r-genomicalignments: Update to 1.26.0.
     new 929179c  gnu: r-rtracklayer: Update to 1.50.0.
     new e42eebf  gnu: r-genomicfeatures: Update to 1.42.1.
     new 7892738  gnu: r-topgo: Update to 2.42.0.
     new 001e9ba  gnu: r-bsgenome: Update to 1.58.0.
     new 9fb37cc  gnu: r-impute: Update to 1.64.0.
     new d40373c  gnu: r-seqpattern: Update to 1.22.0.
     new 99d3341  gnu: r-genomation: Update to 1.22.0.
     new 13b6ef9  gnu: r-seqlogo: Update to 1.56.0.
     new 292540a  gnu: r-zlibbioc: Update to 1.36.0.
     new 83e3974  gnu: r-rhtslib: Update to 1.22.0.
     new 35097ed  gnu: r-bamsignals: Update to 1.22.0.
     new dade0f2  gnu: r-rcas: Update to 1.16.0.
     new a75330d  gnu: r-mutationalpatterns: Update to 3.0.1.
     new 0b75cf0  gnu: r-tximport: Update to 1.18.0.
     new a0b4ba2  gnu: r-annotationfilter: Update to 1.14.0.
     new b3e72dc  gnu: r-chipseq: Update to 1.40.0.
     new 789b988  gnu: r-copywriter: Update to 2.22.0.
     new 465fd7a  gnu: r-methylkit: Update to 1.16.0.
     new 9df7f15  gnu: r-sva: Update to 3.38.0.
     new 64a10c2  gnu: r-protgenerics: Update to 1.22.0.
     new d4801af  gnu: r-mzr: Update to 2.24.1.
     new 55aad1a  gnu: r-mzr: Fix linking.
     new 69578f7  gnu: r-affyio: Update to 1.60.0.
     new 2ba0f1b  gnu: r-affy: Update to 1.68.0.
     new 4ca9ea9  gnu: r-vsn: Update to 3.58.0.
     new bdef7ac  gnu: r-mzid: Update to 1.28.0.
     new 7f4ddd2  gnu: r-pcamethods: Update to 1.82.0.
     new 39c24c5  gnu: Add r-msmseda.
     new 793ee5f  gnu: Add r-msmstests.
     new 5925dc2  gnu: r-msnid: Update to 1.24.0.
     new ce0778f  gnu: r-aroma-light: Update to 3.20.0.
     new 680709a  gnu: r-edaseq: Update to 2.24.0.
     new cce99b2  gnu: r-interactivedisplaybase: Update to 1.28.0.
     new 860cbae  gnu: r-annotationhub: Update to 2.22.0.
     new 322b46e  gnu: r-fastseg: Update to 1.36.0.
     new 439a156  gnu: r-keggrest: Update to 1.30.0.
     new 6d9d4d4  gnu: r-gage: Update to 2.40.0.
     new ced6be3  gnu: r-genomicfiles: Update to 1.26.0.
     new 4ff7677  gnu: r-complexheatmap: Update to 2.6.2.
     new c7b56c2  gnu: r-dirichletmultinomial: Update to 1.32.0.
     new 23d2abd  gnu: r-ensembldb: Update to 2.14.0.
     new db787c0  gnu: r-organismdbi: Update to 1.32.0.
     new 6d1a577  gnu: r-biovizbase: Update to 1.38.0.
     new c7fda72  gnu: r-ggbio: Update to 1.38.0.
     new 5ebd5ac  gnu: r-snpstats: Update to 1.40.0.
     new 04f980b  gnu: r-erma: Update to 1.6.0.
     new ff4a609  gnu: r-ldblock: Update to 1.20.0.
     new bbdc12d  gnu: r-gviz: Update to 1.34.0.
     new 6231fd0  gnu: r-gwascat: Update to 2.22.0.
     new ecc790b  gnu: r-sushi: Update to 1.28.0.
     new b8d1352  gnu: r-annaffy: Update to 1.62.0.
     new 6838aba  gnu: Add r-bluster.
     new f63e020  gnu: Add r-sparsematrixstats.
     new 164c7f6  gnu: r-genomationdata: Update to 1.22.0.
     new 71f0bb3  gnu: r-interactionset: Update to 1.18.0.
     new 488132c  gnu: r-genomicinteractions: Update to 1.24.0.
     new 94a40f4  gnu: r-biocsingular: Update to 1.6.0.
     new c476a57  gnu: r-yapsa: Update to 1.16.0.
     new 3833e2e  gnu: r-singlecellexperiment: Update to 1.12.0.
     new 77068d7  gnu: Add r-rhdf5filters.
     new 9592883  gnu: r-rhdf5: Update to 2.34.0.
     new 7033968  gnu: r-delayedmatrixstats: Update to 1.12.0.
     new 45c0422  gnu: Add r-scuttle.
     new bdb218b  gnu: r-scater: Update to 1.18.3.
     new e5abf60  gnu: r-scran: Update to 1.18.0.
     new 539212b  gnu: r-biocviews: Update to 1.58.1.
     new 244a601  gnu: r-pcatools: Update to 2.2.0.
     new 809a3e9  gnu: r-chipcomp: Update to 1.20.0.
     new 355aab3  gnu: r-scdd: Update to 1.14.0.
     new 92bba28  gnu: r-ggcyto: Update to 1.18.0.
     new ca74083  gnu: Add r-catalyst.
     new 04d92ec  gnu: r-minfi: Update to 1.36.0.
     new 8245c1d  gnu: r-methylumi: Update to 2.36.0.
     new 6b9f5ba  gnu: r-lumi: Update to 2.42.0.
     new ddb0120  gnu: r-quantro: Update to 1.24.0.
     new ccd9e30  gnu: r-yarn: Update to 1.16.0.
     new 66c4502  gnu: r-watermelon: Update to 1.34.0.
     new e064065  gnu: r-bigmelon: Update to 1.16.0.
     new 0047161  gnu: r-gqtlbase: Update to 1.21.1.
     new 3ea642c  gnu: r-gqtlstats: Update to 1.21.3.
     new 3cdc41a  gnu: r-delayedmatrixstats: Update to 1.12.1.
     new abad6a9  gnu: r-rhtslib: Propagate zlib.
     new 74a8f79  gnu: r-diffbind: Update to 3.0.8.

The 323 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.