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branch master updated: gnu: htslib: Enable support for custom URI scheme


From: guix-commits
Subject: branch master updated: gnu: htslib: Enable support for custom URI schemes.
Date: Wed, 07 Oct 2020 09:34:57 -0400

This is an automated email from the git hooks/post-receive script.

roelj pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new fb0037a  gnu: htslib: Enable support for custom URI schemes.
fb0037a is described below

commit fb0037af8cecc0ebaa330392b0c54a35b7b8a424
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Oct 7 15:33:28 2020 +0200

    gnu: htslib: Enable support for custom URI schemes.
    
    * gnu/packages/bioinformatics.scm (htslib)[arguments]: Enable support for 
custom URIs.
---
 gnu/packages/bioinformatics.scm | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3957ae2..fefca80 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4225,6 +4225,13 @@ performance.")
                (base32
                 "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0"))))
     (build-system gnu-build-system)
+    ;; Let htslib translate "gs://" and "s3://" to regular https links with
+    ;; "--enable-gcs" and "--enable-s3". For these options to work, we also
+    ;; need to set "--enable-libcurl".
+    (arguments
+     `(#:configure-flags '("--enable-gcs"
+                           "--enable-libcurl"
+                           "--enable-s3")))
     (inputs
      `(("curl" ,curl)
        ("openssl" ,openssl)))



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