[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch master updated: gnu: Add r-cummerbund.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-cummerbund. |
Date: |
Mon, 27 Apr 2020 05:46:32 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 06fc1a5 gnu: Add r-cummerbund.
06fc1a5 is described below
commit 06fc1a51427f5af0e337e16602cb4920865d54fb
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 11:46:08 2020 +0200
gnu: Add r-cummerbund.
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 83ac5dc..b4be8ae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1096,6 +1096,36 @@ experiment types where it is important to have a
framework in order to inspect
how the coverage distributed across the genome.")
(license license:artistic2.0)))
+(define-public r-cummerbund
+ (package
+ (name "r-cummerbund")
+ (version "2.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "cummeRbund" version))
+ (sha256
+ (base32
+ "1fjc3bcclm4gsvw4nq6cv3a1kbrldvrxbkyfb9306708si1n4dwk"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-fastcluster", r-fastcluster)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gviz" ,r-gviz)
+ ("r-plyr" ,r-plyr)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/cummeRbund/")
+ (synopsis "Analyze Cufflinks high-throughput sequencing data")
+ (description "This package allows for persistent storage, access,
+exploration, and manipulation of Cufflinks high-throughput sequencing
+data. In addition, provides numerous plotting functions for commonly
+used visualizations.")
+ (license license:artistic2.0)))
+
(define-public r-curatedtcgadata
(package
(name "r-curatedtcgadata")
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- branch master updated: gnu: Add r-cummerbund.,
guix-commits <=