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branch master updated: gnu: python-scanpy: Update to 1.4.6.
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guix-commits |
Subject: |
branch master updated: gnu: python-scanpy: Update to 1.4.6. |
Date: |
Sun, 26 Apr 2020 08:04:09 -0400 |
This is an automated email from the git hooks/post-receive script.
efraim pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new ee8de73 gnu: python-scanpy: Update to 1.4.6.
ee8de73 is described below
commit ee8de7381466ad917d1d2cab49830325230b4e5c
Author: Efraim Flashner <address@hidden>
AuthorDate: Sun Apr 26 13:22:35 2020 +0300
gnu: python-scanpy: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
---
gnu/packages/bioinformatics.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b9be0c1..6c5b49e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13365,14 +13365,14 @@ in RNA-seq data.")
(define-public python-scanpy
(package
(name "python-scanpy")
- (version "1.4.5.1")
+ (version "1.4.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scanpy" version))
(sha256
(base32
- "14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j"))))
+ "0s2b6cvaigx4wzw3850qb93sjwwxbzh22kpbp498zklc5rjpbz4l"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -13382,6 +13382,7 @@ in RNA-seq data.")
;; These tests require Internet access.
(delete-file-recursively "scanpy/tests/notebooks")
(delete-file "scanpy/tests/test_clustering.py")
+ (delete-file "scanpy/tests/test_datasets.py")
;; TODO: I can't get the plotting tests to work, even with Xvfb.
(delete-file "scanpy/tests/test_plotting.py")
@@ -13398,8 +13399,8 @@ in RNA-seq data.")
("python-h5py" ,python-h5py)
("python-igraph" ,python-igraph)
("python-joblib" ,python-joblib)
- ("python-louvain" ,python-louvain)
("python-legacy-api-wrap" ,python-legacy-api-wrap)
+ ("python-louvain" ,python-louvain)
("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx)
@@ -13412,6 +13413,7 @@ in RNA-seq data.")
("python-seaborn" ,python-seaborn)
("python-statsmodels" ,python-statsmodels)
("python-tables" ,python-tables)
+ ("python-tqdm" ,python-tqdm)
("python-umap-learn" ,python-umap-learn)))
(native-inputs
`(("python-pytest" ,python-pytest)
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