01/105: gnu: r-nmf: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 7c9d8a5d58d6797a4c224bc76b823d826ceede4b
Author: Ricardo Wurmus <address@hidden>
AuthorDate: Wed Feb 19 18:46:22 2020 +0100

    gnu: r-nmf: Move to (gnu packages bioconductor).
    
    * gnu/packages/statistics.scm (r-nmf): Move this variable from here...
    * gnu/packages/bioconductor.scm (r-nmf): ...to here.
---
 gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++++++++
 gnu/packages/statistics.scm   | 40 ----------------------------------------
 2 files changed, 41 insertions(+), 40 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a6e0c5a..2e0f457 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -722,6 +722,47 @@ the weighted combination of published signatures that, 
when summed, most
 closely reconstructs the mutational profile.")
     (license license:gpl2+)))
 
+;; This is a CRAN package, but it depends on Bioconductor packages.
+(define-public r-nmf
+  (package
+    (name "r-nmf")
+    (version "0.21.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "NMF" version))
+       (sha256
+        (base32
+         "1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"))))
+    (properties `((upstream-name . "NMF")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-cluster" ,r-cluster)
+       ("r-bigmemory" ,r-bigmemory) ; suggested
+       ("r-synchronicity" ,r-synchronicity) ; suggested
+       ("r-colorspace" ,r-colorspace)
+       ("r-digest" ,r-digest)
+       ("r-doparallel" ,r-doparallel)
+       ("r-foreach" ,r-foreach)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-gridbase" ,r-gridbase)
+       ("r-pkgmaker" ,r-pkgmaker)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-registry" ,r-registry)
+       ("r-reshape2" ,r-reshape2)
+       ("r-rngtools" ,r-rngtools)
+       ("r-stringr" ,r-stringr)))
+    (home-page "http://renozao.github.io/NMF";)
+    (synopsis "Algorithms and framework for nonnegative matrix factorization")
+    (description
+     "This package provides a framework to perform Non-negative Matrix
+Factorization (NMF).  The package implements a set of already published
+algorithms and seeding methods, and provides a framework to test, develop and
+plug new or custom algorithms.  Most of the built-in algorithms have been
+optimized in C++, and the main interface function provides an easy way of
+performing parallel computations on multicore machines.")
+    (license license:gpl2+)))
+
 (define-public r-do-db
   (package
     (name "r-do-db")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 313634c..4b1b34c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3420,46 +3420,6 @@ memory-mapped files.")
     ;; Users can choose either LGPLv3 or ASL2.0.
     (license (list license:lgpl3 license:asl2.0))))
 
-(define-public r-nmf
-  (package
-    (name "r-nmf")
-    (version "0.21.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "NMF" version))
-       (sha256
-        (base32
-         "1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"))))
-    (properties `((upstream-name . "NMF")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-cluster" ,r-cluster)
-       ("r-bigmemory" ,r-bigmemory) ; suggested
-       ("r-synchronicity" ,r-synchronicity) ; suggested
-       ("r-colorspace" ,r-colorspace)
-       ("r-digest" ,r-digest)
-       ("r-doparallel" ,r-doparallel)
-       ("r-foreach" ,r-foreach)
-       ("r-ggplot2" ,r-ggplot2)
-       ("r-gridbase" ,r-gridbase)
-       ("r-pkgmaker" ,r-pkgmaker)
-       ("r-rcolorbrewer" ,r-rcolorbrewer)
-       ("r-registry" ,r-registry)
-       ("r-reshape2" ,r-reshape2)
-       ("r-rngtools" ,r-rngtools)
-       ("r-stringr" ,r-stringr)))
-    (home-page "http://renozao.github.io/NMF";)
-    (synopsis "Algorithms and framework for nonnegative matrix factorization")
-    (description
-     "This package provides a framework to perform Non-negative Matrix
-Factorization (NMF).  The package implements a set of already published
-algorithms and seeding methods, and provides a framework to test, develop and
-plug new or custom algorithms.  Most of the built-in algorithms have been
-optimized in C++, and the main interface function provides an easy way of
-performing parallel computations on multicore machines.")
-    (license license:gpl2+)))
-
 (define-public r-r-methodss3
   (package
     (name "r-r-methodss3")