93/285: gnu: python-bbknn: Update to 1.3.6.

[guix-commits]

kkebreau pushed a commit to branch wip-gnome3.34
in repository guix.

commit 4828a8ea5a637350c6338185ae3982de4679429c
Author: Brett Gilio <address@hidden>
Date:   Mon Dec 23 17:31:06 2019 -0600

    gnu: python-bbknn: Update to 1.3.6.
    
    * gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.3.6.
    [arguments]: Disable tests until migration to python-scikit-learn.
    [propgated-inputs]: Remove python-faiss, python-scanpy.
    [propgated-inputs]: Add python-scipy, python-umap-learn.
---
 gnu/packages/bioinformatics.scm | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6488642..e01022e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14,6 +14,7 @@
 ;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <address@hidden>
 ;;; Copyright © 2019 Maxim Cournoyer <address@hidden>
 ;;; Copyright © 2019 Brian Leung <address@hidden>
+;;; Copyright © 2019 Brett Gilio <address@hidden>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -13289,21 +13290,23 @@ million cells.")
 (define-public python-bbknn
   (package
     (name "python-bbknn")
-    (version "1.3.1")
+    (version "1.3.6")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "bbknn" version))
        (sha256
         (base32
-         "1qgdganvj3lyxj84v7alm23b9vqhwpn8z0115qndpnpy90qxynwz"))))
+         "1jbsh01f57zj4bhvjr3jh4532zznqd6nccmgrl3qi9gnhkf7c4y0"))))
     (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; TODO: Enable after migration to scikit-learn.
     (propagated-inputs
      `(("python-annoy" ,python-annoy)
        ("python-cython" ,python-cython)
-       ("python-faiss" ,python-faiss)
        ("python-numpy" ,python-numpy)
-       ("python-scanpy" ,python-scanpy)))
+       ("python-scipy" ,python-scipy)
+       ("python-umap-learn" ,python-umap-learn)))
     (home-page "https://github.com/Teichlab/bbknn";)
     (synopsis "Batch balanced KNN")
     (description "BBKNN is a batch effect removal tool that can be directly