guix-commits
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

18/29: gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.


From: guix-commits
Subject: 18/29: gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
Date: Wed, 4 Dec 2019 03:46:46 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit d78db088623fcfbefc40dafe11d2ecf042842a41
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Dec 4 09:33:35 2019 +0100

    gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
    
    * gnu/packages/bioconductor.scm 
(r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
    Use bioconductor-uri.
---
 gnu/packages/bioconductor.scm | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 86d4735..ca4b57c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -522,12 +522,8 @@ track.  The database is exposed as a @code{TxDb} object.")
     (version "3.4.6")
     (source (origin
               (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib"
-                                  "/TxDb.Hsapiens.UCSC.hg38.knownGene_"
-                                  version ".tar.gz"))
+              (uri (bioconductor-uri "TxDb.Hsapiens.UCSC.hg38.knownGene"
+                                     version 'annotation))
               (sha256
                (base32
                 "12j7rri9r129v9w1yiqadg952dx462dh092sxif3r5kk8l7bxkn9"))))



reply via email to

[Prev in Thread] Current Thread [Next in Thread]