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03/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.


From: guix-commits
Subject: 03/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.
Date: Wed, 4 Dec 2019 03:46:43 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 87073b7ecba65ac541d244dc1f5270ae74736b25
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Dec 4 09:26:22 2019 +0100

    gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.
    
    * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
    Use bioconductor-uri.
    [arguments]: Enable substitution.
---
 gnu/packages/bioconductor.scm | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e332e0c..786c083 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -126,21 +126,14 @@ objects.")
     (version "1.4.0")
     (source (origin
               (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Dmelanogaster.UCSC.dm3_"
-                                  version ".tar.gz"))
+              (uri (bioconductor-uri "BSgenome.Dmelanogaster.UCSC.dm3"
+                                     version 'annotation))
               (sha256
                (base32
                 "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
     (properties
      `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
     (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
     (propagated-inputs
      `(("r-bsgenome" ,r-bsgenome)))
     (home-page



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