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06/08: gnu: Add r-htqpcr.
From: |
guix-commits |
Subject: |
06/08: gnu: Add r-htqpcr. |
Date: |
Tue, 15 Oct 2019 08:21:00 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit 16e2e4f27b4d6c3d58b9ba029c923994cdf9c140
Author: zimoun <address@hidden>
Date: Tue Oct 8 19:35:16 2019 +0200
gnu: Add r-htqpcr.
* gnu/packages/bioconductor.scm (r-htqpcr): New variable.
Signed-off-by: Ludovic Courtès <address@hidden>
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bb28493..dc06bcb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <address@hidden>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <address@hidden>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <address@hidden>
+;;; Copyright © 2019 Simon Tournier <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -6078,3 +6079,36 @@ attributable to individual, tissue, time point, or
technical variables. The
package includes dream differential expression analysis for repeated
measures.")
(license license:gpl2+)))
+
+(define-public r-htqpcr
+ (package
+ (name "r-htqpcr")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HTqPCR" version))
+ (sha256
+ (base32
+ "09xgj797f0qsbm4jswxw7ijjwa4jxg06bfkq66xfhbvascyyrhg7"))))
+ (properties `((upstream-name . "HTqPCR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-biobase" ,r-biobase)
+ ("r-gplots" ,r-gplots)
+ ("r-limma" ,r-limma)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)))
+ (home-page "http://www.ebi.ac.uk/bertone/software")
+ (synopsis "Automated analysis of high-throughput qPCR data")
+ (description
+ "Analysis of Ct values from high throughput quantitative real-time
+PCR (qPCR) assays across multiple conditions or replicates. The input data
+can be from spatially-defined formats such ABI TaqMan Low Density Arrays or
+OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad
+Laboratories; conventional 96- or 384-well plates; or microfluidic devices
+such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data
+loading, quality assessment, normalization, visualization and parametric or
+non-parametric testing for statistical significance in Ct values between
+features (e.g. genes, microRNAs).")
+ (license license:artistic2.0)))
- branch master updated (062158c -> 93beace), guix-commits, 2019/10/15
- 01/08: tests: Skip container test when lacking kernel support., guix-commits, 2019/10/15
- 05/08: gnu: openmpi: Add dependency on UCX when supported., guix-commits, 2019/10/15
- 02/08: offload: Set a longer SSH session timeout., guix-commits, 2019/10/15
- 07/08: gnu: Add r-unifiedwmwqpcr., guix-commits, 2019/10/15
- 08/08: gnu: Add gnome-mahjongg., guix-commits, 2019/10/15
- 04/08: gnu: Add ucx., guix-commits, 2019/10/15
- 06/08: gnu: Add r-htqpcr.,
guix-commits <=
- 03/08: ssh: Add a longer SSH timeout by default., guix-commits, 2019/10/15