01/02: gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 7cd446fd3f1d3b5dce4800d1daba2fa31a07f1b2
Author: Ricardo Wurmus <address@hidden>
Date:   Thu Sep 5 23:33:52 2019 +0200

    gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.
    
    * gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New
    variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ba5415..37cd51d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -708,6 +708,31 @@ the TxDb object of Mouse data as provided by UCSC (mm10, 
December 2011)
 based on the knownGene track.")
     (license license:artistic2.0)))
 
+(define-public r-txdb-celegans-ucsc-ce6-ensgene
+  (package
+    (name "r-txdb-celegans-ucsc-ce6-ensgene")
+    (version "3.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "TxDb.Celegans.UCSC.ce6.ensGene"
+                              version 'annotation))
+       (sha256
+        (base32
+         "1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"))))
+    (properties
+     `((upstream-name . "TxDb.Celegans.UCSC.ce6.ensGene")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-genomicfeatures" ,r-genomicfeatures)))
+    (home-page 
"https://bioconductor.org/packages/TxDb.Celegans.UCSC.ce6.ensGene/";)
+    (synopsis "Annotation package for C elegans TxDb objects")
+    (description
+     "This package exposes a C elegans annotation database generated from UCSC
+by exposing these as TxDb objects.")
+    (license license:artistic2.0)))
+
 (define-public r-fdb-infiniummethylation-hg19
   (package
     (name "r-fdb-infiniummethylation-hg19")