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branch core-updates updated (9c2563a -> 5cc1075)

From: guix-commits
Subject: branch core-updates updated (9c2563a -> 5cc1075)
Date: Thu, 27 Jun 2019 18:10:34 -0400 (EDT)

civodul pushed a change to branch core-updates
in repository guix.

      from  9c2563a   build-system/python: Export 'python-version'.
      adds  2c12be7   gnu: python-mpi4py: Update to 3.0.2.
      adds  88f913e   gnu: lrcalc: Add a patch for identifying include files.
      adds  fedb957   gnu: Add lcalc.
      adds  c68ec87   gnu: iml: Enable shared library.
      adds  e6eafd4   gnu: symmetrica: Generate position-independent code.
      adds  468bfd1   gnu: ratpoints: Generate position-independent code.
      adds  16854b9   gnu: linux-libre@4.14: Update to 4.14.128.
      adds  5e9452a   gnu: linux-libre@4.19: Update to 4.19.53.
      adds  6dc29ab   gnu: linux-libre: Update to 5.1.12.
      adds  c94cc6d   gnu: ungoogled-chromium: Increase build timeout.
      adds  c2c4ac0   gnu: icecat: Update to 60.7.2-guix1 [security fixes].
      adds  b556abe   gnu: khmer: Update to 3.0.0a3.
      adds  e6049c8   gnu: zn-poly: Install all libraries.
      adds  38d4c21   gnu: emacs-fish-completion: Update to 1.1.
      adds  64dc8e9   gnu: Add openjdk12.
      adds  a65f1e8   gnu: Move ratpoints into "sagemath.scm"
      adds  dcdc331   gnu: rclone: Update to 1.48.0.
      adds  cb1d8ae   gnu: gnuplot: Update to 5.2.7.
      adds  4286a6b   gnu: gpgme: Update to 1.13.1.
      adds  41a3498   gnu: cbatticon: Update to 1.6.9.
      adds  6263202   gnu: python-lmdb: Update to 0.95.
      adds  c975043   gnu: scrot: Name source checkout.
      adds  e6de37d   gnu: youtube-dl: Update to 2019.06.21.
      adds  ba96c10   gnu: exo: Update to 0.12.6.
      adds  9b01a72   gnu: pdfpc: Update to 4.3.4.
      adds  1710b8f   gnu: python-robotframework: Update to 3.1.2.
      adds  47d7954   gnu: python-astunparse: Update to 1.6.2.
      adds  0107c9b   gnu: python-twisted: Update to 19.2.1.
      adds  b5cb462   gnu: python-bcrypt: Update to 3.1.7.
      adds  0998175   gnu: python-dask: Update to 1.2.2.
      adds  a617544   gnu: wine-staging: Update to 4.11.
      adds  545946f   gnu: Add openvr.
      adds  d9d836c   gnu: Use license: prefix in tcl.scm.
      adds  a5c86aa   gnu: Add
      adds  453365b   gnu: Add harmonist-tk.
      adds  b95af3f   gnu: python-pyatspi: Fix loading libraries.
      adds  a5d8a2b   gnu: isync: Update to 1.3.1.
      adds  5e15ec6   gnu: mutt: Update to 1.12.1.
      adds  4b93bc0   gnu: stellarium: Update to 0.19.1.
      adds  a5883d1   gnu: stellarium: Don't use NAME in source URI.
      adds  f205f6b   gnu: mate-themes: Update to 3.22.20.
      adds  06ba7f2   gnu: linux-libre@4.4: Update to 4.4.183.
      adds  13a320b   gnu: linux-libre@4.9: Update to 4.9.183.
      adds  cf03bd6   gnu: linux-libre@4.14: Update to 4.14.129.
      adds  9f9dcaa   gnu: linux-libre@4.19: Update to 4.19.55.
      adds  a37cbc4   gnu: linux-libre: Update to 5.1.14.
      adds  fe3846c   gnu: emacs-org-reveal: Update to 20190622.
      adds  4c7ca74   gnu: enchant: Update to 2.2.4.
      adds  22e6855   gnu: spread-sheet-widget: Don't use NAME in source URI.
      adds  258257a   gnu: znc: Update to 1.7.4.
      adds  0f2d9c3   guix build: Use 'warning' for warnings.
      adds  92359ae   guix build: '--log-file' no longer returns several log 
      adds  40c369b   linux-container: Remove dependency on (guix utils).
      adds  91477de   gnu: Add postgresql-11.
      adds  89512e1   gnu: python-parted: Update to 3.11.2.
      adds  2ea3bfe   gnu: Add volumeicon.
      adds  455d29d   gnu: python-parted: Don't use unstable tarball.
      adds  8b78ba2   gnu: drumkv1: Update to 0.9.8.
      adds  8c7c768   gnu: synthv1: Update to 0.9.8.
      adds  d32f2aa   gnu: samplv1: Update to 0.9.8.
      adds  0246bfc   gnu: padthv1: Update to 0.9.8.
      adds  3b39f09   gnu: googletest: Update to 1.8.1.
      adds  57945dd   gnu: znc: Switch back to Guix's googletest package.
      adds  f9d55c4   tests: Import (guix build utils) in the marionette.
      adds  bb11825   publish: Work around Guile 2.2.5 (web server) bug.
      adds  f98ca15   gnu: apl: Update to 1.8.
      adds  a220a68   gnu: apl: Add pcre support.
      adds  38c8437   gnu: weston: Update to 6.0.1.
      adds  b6f5339   progress: Call 'time-difference' on times of the same 
      adds  2135610   gnu: Add Guile-JPEG.
      adds  a53a60e   doc: Recommend '-enable-kvm' for installing in a VM as 
      adds  0207ebf   doc: Use new upstream nomenclature for NetworkManager’s 
      adds  57c16c9   services: network-manager: Create '/var/lib/misc' 
directory for dnsmasq.
      adds  dc17daa   doc: Document use cases for NetworkManager with dnsmasq.
      adds  e746d1c   gnu: python-stem: Update to 1.7.1.
      adds  f80ad8f   gnu: emacs-with-editor: Update to 2.8.3.
      adds  0f658fe   gnu: emacs-prescient: Update to 3.1.
      adds  60aca40   gnu: emacs-company: Update to 0.9.10.
      adds  8154770   gnu: emacs-nodejs-repl: Update to 0.2.1.
      adds  ac7b33e   gnu: emacs-typescript-mode: Don't use unstable tarball.
      adds  fe8a314   gnu: emacs-tide: Don't use unstable tarball.
      adds  e923a87   gnu: emacs-wgrep: Don't use unstable tarball.
      adds  d5b326f   gnu: emacs-posframe: Update to 0.4.3.
      adds  51c12bf   gnu: emacs-evil-surround: Update to 1.0.4.
      adds  b27558e   gnu: emacs-erc-hl-nicks: Don't use unstable tarball.
      adds  09cd076   gnu: emacs-evil-matchit: Update to 2.3.0.
      adds  59d7562   gnu: emacs-evil-anzu: Don't use unstable tarball.
      adds  94a8f41   gnu: emacs-helpful: Update to 0.16.
      adds  b418dc6   gnu: emacs-magit-todos: Update to 1.2.
      adds  c0696c9   gnu: emacs-counsel-etags: Update to 1.8.4.
      adds  8234df4   gnu: Add emacs-org-download.
      adds  a5d688a   gnu: emacs-outshine: Update to 3.0.1.
      adds  1bad964   gnu: Add emacs-frecency.
      adds  d6681c4   gnu: Add emacs-org-recent-headings.
      adds  e7dc1a3   gnu: Add emacs-org-super-agenda.
      adds  3484640   gnu: Add emacs-org-make-toc.
      adds  25bbcba   gnu: Add emacs-org-ql.
      adds  6c83c79   gnu: emacs-emojify: Update to 1.2.
      adds  f27b965   gnu: Add emacs-make-it-so.
      adds  b2f2637   gnu: emacs-nix-mode: Update to 1.4.1.
      adds  07fb336   gnu: emacs-orgit: Update to 1.5.3.
      adds  3a943f0   gnu: emacs-ivy-rich: Update to 0.1.4-1.f6bfa29.
      adds  398d9ef   gnu: emacs-zones: Update to 0-2.3169815.
      adds  dddfabb   gnu: emacs-alert: Update to 1.3.
      adds  b04cc2f   gnu: emacs-posframe: Update to 0.5.0.
      adds  ca64945   gnu: signing-party: Update home-page.
      adds  cbebccb   gnu: signing-party: Update to 2.10.
      adds  44efdc0   gnu: perl-file-slurp: Update to 9999.27.
      adds  6775e78   gnu: perl-mailtools: Update to 2.21.
      adds  fa678c0   gnu: perl-super: Update to 1.20190531.
      adds  488f4e3   gnu: perl-cpanel-json-xs: Update to 4.12.
      adds  7aee2f5   gnu: libvirt: Honour MAKE-FLAGS everywhere.
      adds  1e62397   gnu: libvirt: Update to 5.4.0 [security fixes].
      adds  bd9eb38   gnu: libvirt: Enable the test suite.
      adds  175047c   gnu: libvirt: Use conventional doc/ directory.
      adds  fabcf8c   gnu: calcurse: Update to 4.5.0.
      adds  591464e   gnu: memcached: Update to 1.5.16.
      adds  d7463e0   gnu: znc: Don't refer to native-inputs.
      adds  1d0caec   gnu: python-libvirt: Update to 5.3.0.
      adds  2b0f329   gnu: znc: Build with CMake.
      adds  44ddf0f   gnu: znc: Enable internationalisation.
      adds  ec5987f   gnu: deutex: Update to 5.2.0.
      adds  5fbb9f0   gnu: deutex: Don't use NAME in source URI.
      adds  89c943d   gnu: android-googletest: Downgrade to 1.8.0.
      adds  e526db5   gnu: schismtracker: Update to 20190614.
      adds  59b98b4   gnu: mc: Update to 4.8.23.
      adds  8cba7d2   gnu: rofi: Update to 1.5.3.
      adds  0e1c5cc   gnu: exiv2: Update to 0.27.1.
      adds  77c2899   compile: Enable 'shadowed-toplevel' warning.
      adds  ee700da   build: Report build errors via 'report-load-error'.
      adds  85a411b   gnu: guile-persist: Install .go files in the right place.
      adds  fbfc07b   gnu: Add leela-zero.
      adds  9f8311a   gnu: Add clunit.
      adds  20b96ce   gnu: Add py4cl.
      adds  ab84ea9   gnu: Add parse-declarations.
      adds  2ddc55c   gnu: Add cl-quickcheck.
      adds  245b19c   gnu: Add burgled-batteries3.
      adds  98b9409   gnu: Add metabang-bind.
      adds  31263ec   gnu: Add fare-utils.
      adds  8566d87   gnu: toot: Don't install the Makefile.
      adds  46475f7   gnu: openssh: Don't create the PRIVSEP_PATH directory.
      adds  7754136   gnu: openssh: Clean-up custom install phase.
      adds  535fc98   gnu: sessreg: Update to 1.1.2.
      adds  455e6a3   gnu: cmus: Update to 2.8.0.
      adds  887ae61   gnu: perl-libwww: Update to 6.39.
      adds  201a25a   gnu: perl-uri: Update to 1.76.
      adds  a402b08   gnu: perl-base: Part of Perl core.
      adds  6c6a049   gnu: perl-parent: Part of Perl core.
      adds  d8dbfbc   gnu: bash-completion: Fix cross-compilation.
      adds  fdbf444   linux-initrd: Fix cross compilation.
      adds  10a303a   gnu: xcalc: Update to 1.1.0.
      adds  f6d78ff   gnu: linux-libre@4.14: Update to 4.14.130.
      adds  a579f93   gnu: linux-libre@4.19: Update to 4.19.56.
      adds  5a7e7ca   gnu: linux-libre: Update to 5.1.15.
      adds  dae2eb1   gnu: Add python-typed-ast.
      adds  2fdfa19   gnu: Add emacs-ascii-art-to-unicode.
      adds  d558e23   gnu: Add emacs-xpm.
      adds  dc7c489   gnu: Add emacs-gnugo.
      adds  d2a9326   gnu: Add idna.
      adds  ccba380   gnu: Add swap-bytes.
      adds  69c68b4   gnu: Add sbcl-iolib.asdf.
      adds  63158bf   gnu: Add sbcl-iolib.conf.
      adds  213937f   gnu: Add sbcl-iolib.common-lisp.
      adds  5dffca3   gnu: Add sbcl-iolib.base.
      adds  216dd6f   gnu: Add sbcl-iolib.grovel.
      adds  ef656e1   gnu: Add sbcl-iolib.
      adds  a353166   gnu: Add sbcl-iolib+multiplex.
      adds  5b68605   gnu: Add sbcl-iolib+syscalls.
      adds  28f3e3b   gnu: Add sbcl-iolib+streams.
      adds  9f641dd   gnu: Add sbcl-iolib+sockets.
      adds  6ac69aa   gnu: Add sbcl-ieee-floats.
      adds  6301520   gnu: Add sbcl-closure-common.
      adds  167fec2   gnu: Add sbcl-cl-reexport.
      adds  536dcaf   gnu: Add sbcl-cl-cookie.
      adds  2cb738a   gnu: Add r-rsubread.
      adds  ca310f6   gnu: Add celestia.
      adds  67d24b1   gnu: Add celestia-gtk.
      adds  5d5edb8   gnu: python-on-guile: Update to 00a51a2.
      adds  8381715   gnu: python-on-guile: Wrap 'python' executable.
      adds  f825e60   gnu: Add python-bsddb3
      adds  ee34be7   gnu: Add osm-gps-map
      adds  072e986   gnu: Add gramps
      adds  4980b0b   gnu: libcxx: Update hash.
      adds  a2cc25a   gnu: Add libclc.
      adds  fae4294   gnu: Add mesa-opencl.
      adds  37cb4e5   gnu: Add mesa-opencl-icd.
      adds  bb74ea0   gnu: Add python-pathlib2.
      adds  3e8f76d   gnu: Add python-contextlib2.
      adds  724a350   gnu: Add python-setuptools-git.
      adds  94f960f   gnu: Add python-zipp.
      adds  15b6561   gnu: Add python-importlib-metadata.
      adds  85bf679   gnu: Add python-pytest-checkdocs.
      adds  3b89476   gnu: Add python-pytest-flake8.
      adds  21e2c55   gnu: Add python-pytest-shutil.
      adds  7d5ffec   gnu: Add python-pytest-fixture-config.
      adds  05b3dcb   gnu: Add python-pytest-virtualenv.
      adds  37c173d   gnu: Add python-jaraco-packaging.
      adds  49ad11e   gnu: python-pathpy: Update to 11.5.0.
      adds  75a137d   gnu: Add texmacs.
      adds  cac6c3b   gnu: supertux: Fix homepage.
      adds  1ebb908   Revert "gnu: openssh: Clean-up custom install phase."
      adds  ba91247   Revert "gnu: openssh: Don't create the PRIVSEP_PATH 
      adds  7a70e7c   gnu: electron-cash: Update to 4.0.7.
      adds  edccf76   gnu: sawfish: Update to 1.12.0.
      adds  4ffed73   gnu: rep-gtk: Update to
      adds  b09e496   gnu: dosbox: Update to 0.74-3.
      adds  c25b44d   accounts: Use 'fsync' instead of 'fdatasync'.
      adds  8874faa   ui: 'relevance' considers regexps connected with a 
logical and.
      adds  4593f5a   syscalls: Add 'terminal-rows'.
      adds  4311cf9   ui: Add 'display-search-results' and use it.
      adds  c89985d   derivations: Add 'derivation-input'.
      adds  ba04f80   derivations: Rewrite and replace 
      adds  9844d00   ui: 'show-what-to-build' uses 'derivation-build-plan'.
      adds  a250061   graph: Use 'derivation-input-derivation'.
      adds  5cf4b26   derivations: <derivation-input> now aggregates a 
      adds  fd951cd   derivations: 'derivation' preserves pointer equality.
      adds  7c690a4   derivations: 'build-derivations' can be passed derivation 
      adds  066eeae   packages: 'specification->package+output' distinguishes 
"no output specified".
      adds  d38d4ff   ui: 'show-what-to-build' accepts derivation inputs.
      adds  08c95ba   ui: 'show-derivation-outputs' accepts <derivation-input> 
      adds  c30d117   tests: Avoid TCP port collision between lint.scm and
       new  5cc1075   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 build-aux/compile-all.scm                          |  59 +-
 doc/guix.texi                                      |  34 +-
 gnu/build/accounts.scm                             |  14 +-
 gnu/build/linux-container.scm                      |  16 +-
 gnu/                                       |  10 +-
 gnu/packages.scm                                   |   8 +-
 gnu/packages/admin.scm                             |   4 +-
 gnu/packages/algebra.scm                           |  47 +-
 gnu/packages/android.scm                           |  12 +
 gnu/packages/apl.scm                               |   8 +-
 gnu/packages/astronomy.scm                         |  99 +++-
 gnu/packages/bash.scm                              |   8 +-
 gnu/packages/bioconductor.scm                      |  24 +
 gnu/packages/bioinformatics.scm                    |  12 +-
 gnu/packages/calcurse.scm                          |   4 +-
 gnu/packages/check.scm                             |  11 +-
 gnu/packages/chromium.scm                          |   5 +
 gnu/packages/databases.scm                         |  22 +-
 gnu/packages/disk.scm                              |  13 +-
 gnu/packages/emacs-xyz.scm                         | 541 +++++++++++++-----
 gnu/packages/emulators.scm                         |   4 +-
 gnu/packages/enchant.scm                           |   5 +-
 gnu/packages/finance.scm                           |   4 +-
 gnu/packages/freedesktop.scm                       |   4 +-
 gnu/packages/game-development.scm                  |  34 +-
 gnu/packages/games.scm                             |  73 ++-
 gnu/packages/genealogy.scm                         | 112 ++++
 gnu/packages/geo.scm                               |  33 ++
 gnu/packages/gl.scm                                |  25 +
 gnu/packages/gnome.scm                             |  15 +-
 gnu/packages/gnupg.scm                             |  18 +-
 gnu/packages/gnuzilla.scm                          |   4 +-
 gnu/packages/gtk.scm                               |  37 +-
 gnu/packages/guile-xyz.scm                         |  66 ++-
 gnu/packages/image.scm                             |  28 +-
 gnu/packages/java.scm                              |  44 ++
 gnu/packages/linux.scm                             |  20 +-
 gnu/packages/lisp.scm                              | 627 +++++++++++++++++++++
 gnu/packages/llvm.scm                              |  41 +-
 gnu/packages/mail.scm                              |   8 +-
 gnu/packages/mastodon.scm                          |   6 +
 gnu/packages/mate.scm                              |  11 +-
 gnu/packages/maths.scm                             |   4 +-
 gnu/packages/mc.scm                                |   4 +-
 gnu/packages/messaging.scm                         |  62 +-
 gnu/packages/mpi.scm                               |   4 +-
 gnu/packages/music.scm                             |  43 +-
 .../patches/emacs-zones-called-interactively.patch |  18 +-
 gnu/packages/patches/khmer-use-libraries.patch     |  16 -
 .../patches/lcalc-default-parameters-1.patch       |  26 +
 .../patches/lcalc-default-parameters-2.patch       |  58 ++
 gnu/packages/patches/lcalc-lcommon-h.patch         |  13 +
 .../patches/lcalc-using-namespace-std.patch        |  43 ++
 gnu/packages/patches/leela-zero-gtest.patch        |  40 ++
 gnu/packages/patches/lrcalc-includes.patch         |  92 +++
 .../patches/python-pyatspi-python-37.patch         |  82 +++
 gnu/packages/pdf.scm                               |   4 +-
 gnu/packages/perl.scm                              |  60 +-
 gnu/packages/python-check.scm                      | 135 +++++
 gnu/packages/python-compression.scm                |  33 +-
 gnu/packages/python-crypto.scm                     |   5 +-
 gnu/packages/python-xyz.scm                        | 299 ++++++++--
 gnu/packages/sagemath.scm                          | 123 +++-
 gnu/packages/sawfish.scm                           |  34 +-
 gnu/packages/sync.scm                              |  18 +-
 gnu/packages/tcl.scm                               |  42 +-
 gnu/packages/text-editors.scm                      |  49 ++
 gnu/packages/video.scm                             |   4 +-
 gnu/packages/virtualization.scm                    |  48 +-
 gnu/packages/web.scm                               |  10 +-
 gnu/packages/wine.scm                              |   6 +-
 gnu/packages/xdisorg.scm                           |   7 +-
 gnu/packages/xfce.scm                              |   4 +-
 gnu/packages/xorg.scm                              |  21 +-
 gnu/services/networking.scm                        |  18 +-
 gnu/system/linux-initrd.scm                        |   7 +-
 gnu/tests/base.scm                                 |   4 +-
 gnu/tests/install.scm                              |   1 +
 guix/build/compile.scm                             |   3 +-
 guix/build/syscalls.scm                            |  37 +-
 guix/derivations.scm                               | 277 +++++----
 guix/progress.scm                                  |   4 +-
 guix/scripts/build.scm                             |  11 +-
 guix/scripts/graph.scm                             |   3 +-
 guix/scripts/package.scm                           |  41 +-
 guix/scripts/publish.scm                           |  26 +
 guix/scripts/system/search.scm                     |  44 +-
 guix/ui.scm                                        | 142 +++--
 tests/derivations.scm                              |  80 +--
 tests/grafts.scm                                   |  14 +-
 tests/                               |   2 +-
 tests/packages.scm                                 |  32 ++
 tests/syscalls.scm                                 |   5 +-
 tests/ui.scm                                       |  27 +-
 94 files changed, 3454 insertions(+), 901 deletions(-)
 create mode 100644 gnu/packages/genealogy.scm
 delete mode 100644 gnu/packages/patches/khmer-use-libraries.patch
 create mode 100644 gnu/packages/patches/lcalc-default-parameters-1.patch
 create mode 100644 gnu/packages/patches/lcalc-default-parameters-2.patch
 create mode 100644 gnu/packages/patches/lcalc-lcommon-h.patch
 create mode 100644 gnu/packages/patches/lcalc-using-namespace-std.patch
 create mode 100644 gnu/packages/patches/leela-zero-gtest.patch
 create mode 100644 gnu/packages/patches/lrcalc-includes.patch
 create mode 100644 gnu/packages/patches/python-pyatspi-python-37.patch

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