01/01: gnu: Add r-rsubread.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 2cb738a6ad29f74b164a3dda16024591f9d70a88
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Jun 26 15:51:55 2019 +0200

    gnu: Add r-rsubread.
    
    * gnu/packages/bioconductor.scm (r-rsubread): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a1f7b2d..92f2e4f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4745,3 +4745,27 @@ enhancers.  The annotatr package provides an easy way to 
summarize and
 visualize the intersection of genomic sites/regions with genomic
 annotations.")
     (license license:gpl3)))
+
+(define-public r-rsubread
+  (package
+    (name "r-rsubread")
+    (version "1.34.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Rsubread" version))
+       (sha256
+        (base32
+         "0bsrw61wcav0q22c5m6gr0vn1f3c3ld8gxj730wcab6dj196z6q3"))))
+    (properties `((upstream-name . "Rsubread")))
+    (build-system r-build-system)
+    (inputs `(("zlib" ,zlib)))
+    (home-page "https://bioconductor.org/packages/Rsubread/";)
+    (synopsis "Subread sequence alignment and counting for R")
+    (description
+     "This package provides tools for alignment, quantification and analysis
+of second and third generation sequencing data.  It includes functionality for
+read mapping, read counting, SNP calling, structural variant detection and
+gene fusion discovery.  It can be applied to all major sequencing techologies
+and to both short and long sequence reads.")
+    (license license:gpl3)))