[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
11/14: gnu: Add r-rhisat2.
From: |
guix-commits |
Subject: |
11/14: gnu: Add r-rhisat2. |
Date: |
Fri, 10 May 2019 07:34:36 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 5865606459d018758be55f31f8fa4b1f849fa74e
Author: Ricardo Wurmus <address@hidden>
Date: Fri May 10 13:12:07 2019 +0200
gnu: Add r-rhisat2.
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fce157a..e534b33 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -24,6 +24,7 @@
#:use-module (guix download)
#:use-module (guix build-system r)
#:use-module (gnu packages)
+ #:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
@@ -4433,3 +4434,31 @@ at the start or end of each splice variant. The
software includes functions
for splice event prediction, quantification, visualization and
interpretation.")
(license license:artistic2.0)))
+
+(define-public r-rhisat2
+ (package
+ (name "r-rhisat2")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rhisat2" version))
+ (sha256
+ (base32
+ "1d1gwl8l2z8kzfvkp1s8vfrh6jbq9ha25dplpf9g62qqa8a46hga"))))
+ (properties `((upstream-name . "Rhisat2")))
+ (build-system r-build-system)
+ (native-inputs
+ `(("which" ,which)))
+ (propagated-inputs
+ `(("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-sgseq" ,r-sgseq)))
+ (home-page "https://github.com/fmicompbio/Rhisat2")
+ (synopsis "R Wrapper for HISAT2 sequence aligner")
+ (description
+ "This package provides an R interface to the HISAT2 spliced short-read
+aligner by Kim et al. (2015). The package contains wrapper functions to
+create a genome index and to perform the read alignment to the generated
+index.")
+ (license license:gpl3)))
- branch master updated (b40a36b -> d13f3a0), guix-commits, 2019/05/10
- 01/14: gnu: Add r-iclusterplus., guix-commits, 2019/05/10
- 02/14: gnu: Add r-rbowtie., guix-commits, 2019/05/10
- 12/14: gnu: Add r-quasr., guix-commits, 2019/05/10
- 05/14: gnu: Add r-plot3d., guix-commits, 2019/05/10
- 07/14: gnu: Add r-refmanager., guix-commits, 2019/05/10
- 13/14: gnu: Add r-rqc., guix-commits, 2019/05/10
- 06/14: gnu: Add r-ggfortify., guix-commits, 2019/05/10
- 11/14: gnu: Add r-rhisat2.,
guix-commits <=
- 03/14: gnu: Add r-dalex., guix-commits, 2019/05/10
- 09/14: gnu: Add r-xgboost., guix-commits, 2019/05/10
- 14/14: gnu: gnome-tweak-tool: Update to 3.28.1., guix-commits, 2019/05/10
- 04/14: gnu: Add r-enrichr., guix-commits, 2019/05/10
- 08/14: gnu: Add r-citr., guix-commits, 2019/05/10
- 10/14: gnu: Add r-sgseq., guix-commits, 2019/05/10