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branch master updated (123e424 -> 85c1d20)

From: guix-commits
Subject: branch master updated (123e424 -> 85c1d20)
Date: Sun, 5 May 2019 18:15:27 -0400 (EDT)

rekado pushed a change to branch master
in repository guix.

      from  123e424   doc: Fix typo.
       new  6490cd3   guix: Update to Bioconductor 3.9.
       new  72032c9   gnu: Add r-base64url.
       new  9939129   gnu: Add r-biocsingular.
       new  8128189   gnu: Add r-rcpphnsw.
       new  78735b9   gnu: Add r-grimport2.
       new  2b9d4f5   gnu: Add r-scrime.
       new  04bf86b   gnu: Add r-blme.
       new  be23c49   gnu: Add r-batchtools.
       new  0c8960d   gnu: Add r-clue.
       new  b8d6dff   gnu: Add r-sitmo.
       new  3961b3b   gnu: Add r-dqrng.
       new  3b13b6d   gnu: r-units: Update to 0.6-3.
       new  52b4703   gnu: r-rgraphviz: Update to 2.28.0.
       new  295f35d   gnu: r-preprocesscore: Update to 1.46.0.
       new  0183163   gnu: r-genefilter: Update to 1.66.0.
       new  9a39193   gnu: r-deseq2: Update to 1.24.0.
       new  0a58282   gnu: r-dexseq: Update to 1.30.0.
       new  7f73724   gnu: r-annotationforge: Update to 1.26.0.
       new  aa51a24   gnu: r-rbgl: Update to 1.60.0.
       new  08d2a26   gnu: r-gseabase: Update to 1.46.0.
       new  4d88dbe   gnu: r-category: Update to 2.50.0.
       new  fe40f55   gnu: r-gostats: Update to 2.50.0.
       new  49f3090   gnu: r-shortread: Update to 1.42.0.
       new  ce52cab   gnu: r-grohmm: Update to 1.18.0.
       new  440af64   gnu: r-biocviews: Update to 1.52.0.
       new  e01b72d   gnu: r-biocstyle: Update to 2.12.0.
       new  8bdf7d5   gnu: r-bioccheck: Update to 1.20.0.
       new  192ddab   gnu: r-s4vectors: Update to 0.22.0.
       new  3814211   gnu: r-iranges: Update to 2.18.0.
       new  6dc05d0   gnu: r-genomeinfodb: Update to 1.20.0.
       new  1e3f53a   gnu: r-edger: Update to 3.26.0.
       new  0d094ad   gnu: r-variantannotation: Update to 1.30.0.
       new  5fadf39   gnu: r-limma: Update to 3.40.0.
       new  bc0e5bc   gnu: r-xvector: Update to 0.24.0.
       new  b35bc56   gnu: r-genomicranges: Update to 1.36.0.
       new  4aadfcd   gnu: r-biobase: Update to 2.44.0.
       new  a1b9378   gnu: r-annotationdbi: Update to 1.46.0.
       new  933571d   gnu: r-biomart: Update to 2.40.0.
       new  e10b67c   gnu: r-biocparallel: Update to 1.18.0.
       new  d2e1654   gnu: r-biostrings: Update to 2.52.0.
       new  14561bb   gnu: r-delayedarray: Update to 0.10.0.
       new  8671d1e   gnu: r-summarizedexperiment: Update to 1.14.0.
       new  6ff6973   gnu: r-genomicalignments: Update to 1.20.0.
       new  40d9736   gnu: r-rtracklayer: Update to 1.44.0.
       new  d31f8d1   gnu: r-genomicfeatures: Update to 1.36.0.
       new  971df3a   gnu: r-topgo: Update to 2.36.0.
       new  651b62c   gnu: r-bsgenome: Update to 1.52.0.
       new  d726689   gnu: r-seqpattern: Update to 1.16.0.
       new  6ef47ac   gnu: r-genomation: Update to 1.16.0.
       new  a714324   gnu: r-seqlogo: Update to 1.50.0.
       new  3be113b   gnu: r-motifrg: Update to 1.28.0.
       new  c648e67   gnu: r-zlibbioc: Update to 1.30.0.
       new  23ce7f3   gnu: r-rhtslib: Update to 1.16.1.
       new  45aeb4e   gnu: r-bamsignals: Update to 1.16.0.
       new  5b65a85   gnu: r-mutationalpatterns: Update to 1.10.0.
       new  c030eb5   gnu: r-tximport: Update to 1.12.0.
       new  f6ecdaf   gnu: r-rhdf5: Update to 2.28.0.
       new  dbb4aa4   gnu: r-annotationfilter: Update to 1.8.0.
       new  70c4444   gnu: r-chipseq: Update to 1.34.0.
       new  59bef6e   gnu: r-copywriter: Update to 2.16.0.
       new  10cb991   gnu: r-sva: Update to 3.32.0.
       new  24aabd8   gnu: r-protgenerics: Update to 1.16.0.
       new  5498cc4   gnu: r-mzr: Update to 2.18.0.
       new  fdbaa5c   gnu: r-affyio: Update to 1.54.0.
       new  15f240e   gnu: r-affy: Update to 1.62.0.
       new  9421e6b   gnu: r-vsn: Update to 3.52.0.
       new  f955afd   gnu: r-mzid: Update to 1.22.0.
       new  ee386fc   gnu: r-pcamethods: Update to 1.76.0.
       new  b65c264   gnu: r-msnbase: Update to 2.10.0.
       new  dd03589   gnu: r-msnid: Update to 1.18.0.
       new  95f3a46   gnu: r-aroma-light: Update to 3.14.0.
       new  b765fc4   gnu: r-deseq: Update to 1.36.0.
       new  975b72f   gnu: r-edaseq: Update to 2.18.0.
       new  fab5f7c   gnu: r-interactivedisplaybase: Update to 1.22.0.
       new  fbf3494   gnu: Add r-biocfilecache.
       new  f2a63d1   gnu: r-delayedmatrixstats: Update to 1.6.0.
       new  4540727   gnu: r-scran: Update to 1.12.0.
       new  70d04dc   gnu: r-scater: Update to 1.12.0.
       new  029cefd   gnu: r-singlecellexperiment: Update to 1.6.0.
       new  583b4fd   gnu: r-beachmat: Update to 2.0.0.
       new  d5625b3   gnu: r-rhdf5lib: Update to 1.6.0.
       new  6592557   gnu: r-hdf5array: Update to 1.12.0.
       new  e998a26   gnu: r-hitc: Update to 1.28.0.
       new  7705165   gnu: r-fithic: Update to 1.10.0.
       new  256609e   gnu: r-sushi: Update to 1.22.0.
       new  1b454f9   gnu: r-gwascat: Update to 2.16.0.
       new  105d9e2   gnu: r-gviz: Update to 1.28.0.
       new  a349d57   gnu: r-gqtlstats: Update to 1.16.0.
       new  89ba9a7   gnu: r-ldblock: Update to 1.14.0.
       new  3c5f5b4   gnu: r-erma: Update to 1.0.0.
       new  ed7de45   gnu: r-snpstats: Update to 1.34.0.
       new  623be1a   gnu: r-gqtlbase: Update to 1.16.0.
       new  d38fbac   gnu: r-ggbio: Update to 1.32.0.
       new  a98c3b4   gnu: r-biovizbase: Update to 1.32.0.
       new  96f98c5   gnu: r-organismdbi: Update to 1.26.0.
       new  0af6efa   gnu: r-ensembldb: Update to 2.8.0.
       new  e2cb234   gnu: r-dirichletmultinomial: Update to 1.26.0.
       new  70a3e44   gnu: r-complexheatmap: Update to 2.0.0.
       new  d4ef1d5   gnu: r-genomicfiles: Update to 1.20.0.
       new  c798455   gnu: r-gage: Update to 2.34.0.
       new  e699e8e   gnu: r-keggrest: Update to 1.24.0.
       new  a8abc8d   gnu: r-fastseg: Update to 1.30.0.
       new  b173dbe   gnu: r-annotationhub: Update to 2.16.0.
       new  8322c86   gnu: r-methylkit: Update to 1.10.0.
       new  2b4ac1d   gnu: r-rcas: Update to 1.10.0.
       new  82d9340   gnu: r-impute: Update to 1.58.0.
       new  9bcbca1   gnu: r-rsamtools: Update to 2.0.0.
       new  3addf73   gnu: r-systempiper: Update to 1.18.0.
       new  81a1c45   gnu: r-biocgenerics: Update to 0.30.0.
       new  0c53332   gnu: r-annotate: Update to 1.62.0.
       new  43a23a0   gnu: r-hpar: Update to 1.26.0.
       new  4b53d55   gnu: r-regioner: Update to 1.16.0.
       new  3e1bc88   gnu: r-geneplotter: Update to 1.62.0.
       new  e02162f   gnu: r-qvalue: Update to 2.16.0.
       new  4c221b3   gnu: r-diffbind: Update to 2.12.0.
       new  0968a44   gnu: r-ripseeker: Update to 1.24.0.
       new  588b63c   gnu: r-multtest: Update to 2.40.0.
       new  a61bcb2   gnu: r-graph: Update to 1.62.0.
       new  bcb95b7   gnu: r-marray: Update to 1.62.0.
       new  8efb842   gnu: r-cghbase: Update to 1.44.0.
       new  2317730   gnu: r-cghcall: Update to 2.46.0.
       new  4f4bed7   gnu: r-qdnaseq: Update to 1.20.0.
       new  c38de81   gnu: r-bayseq: Update to 2.18.0.
       new  1ddd4af   gnu: r-chipcomp: Update to 1.14.0.
       new  7d5acf7   gnu: r-riboprofiling: Update to 1.14.0.
       new  eff6b2e   gnu: r-riboseqr: Update to 1.18.0.
       new  176a264   gnu: r-interactionset: Update to 1.12.0.
       new  1236ce8   gnu: r-genomicinteractions: Update to 1.18.0.
       new  7a5d729   gnu: r-ctc: Update to 1.58.0.
       new  40f0ee4   gnu: r-goseq: Update to 1.36.0.
       new  0725295   gnu: r-glimma: Update to 1.12.0.
       new  5bf7eb4   gnu: r-rots: Update to 1.12.0.
       new  5dce715   gnu: r-plgem: Update to 1.56.0.
       new  3649d04   gnu: r-inspect: Update to 1.14.0.
       new  774e499   gnu: r-dnabarcodes: Update to 1.14.0.
       new  d8771f5   gnu: r-ruvseq: Update to 1.18.0.
       new  6fc161f   gnu: r-biocneighbors: Update to 1.2.0.
       new  0aa72f2   gnu: r-destiny: Update to 2.14.0.
       new  8d3d0c3   gnu: r-savr: Update to 1.22.0.
       new  58a43fc   gnu: r-chipexoqual: Update to 1.8.0.
       new  d941918   gnu: r-copynumber: Update to 1.24.0.
       new  d5f3c0d   gnu: r-dnacopy: Update to 1.58.0.
       new  301c4ff   gnu: r-deds: Update to 1.58.0.
       new  4a3c47e   gnu: r-ebseq: Update to 1.24.0.
       new  61c79d5   gnu: r-lpsymphony: Update to 1.12.0.
       new  bcd8b7a   gnu: r-ihw: Update to 1.12.0.
       new  3fd2ea8   gnu: r-icobra: Update to 1.12.0.
       new  a0ff725   gnu: r-mast: Update to 1.10.0.
       new  78b6326   gnu: r-monocle: Update to 2.12.0.
       new  6a2c58b   gnu: r-noiseq: Update to 2.28.0.
       new  7baa59e   gnu: r-scdd: Update to 1.8.0.
       new  26c72ff   gnu: r-scone: Update to 1.8.0.
       new  2d44308   gnu: r-geoquery: Update to 2.52.0.
       new  fadc6db   gnu: r-illuminaio: Update to 0.26.0.
       new  409f4dd   gnu: r-siggenes: Update to 1.58.0.
       new  693a980   gnu: r-bumphunter: Update to 1.26.0.
       new  8c0fae3   gnu: r-minfi: Update to 1.30.0.
       new  2986b51   gnu: r-methylumi: Update to 2.30.0.
       new  5551b07   gnu: r-lumi: Update to 2.36.0.
       new  48c2a7e   gnu: r-linnorm: Update to 2.8.0.
       new  2ee9117   gnu: r-ioniser: Update to 2.8.0.
       new  bc083ec   gnu: r-triform: Update to 1.26.0.
       new  c2effde   gnu: r-varianttools: Update to 1.26.0.
       new  376d1fe   gnu: r-heatplus: Update to 2.30.0.
       new  24cf7ba   gnu: r-gosemsim: Update to 2.10.0.
       new  0a41b5d   gnu: r-anota: Update to 1.32.0.
       new  3e5ee6f   gnu: r-sigpathway: Update to 1.52.0.
       new  ebffd24   gnu: r-fgsea: Update to 1.10.0.
       new  1990ff9   gnu: r-dose: Update to 3.10.0.
       new  77d28d6   gnu: r-enrichplot: Update to 1.4.0.
       new  1a3e33b   gnu: r-clusterprofiler: Update to 3.12.0.
       new  8265a11   gnu: r-mlinterfaces: Update to 1.64.0.
       new  8bef9df   gnu: r-annaffy: Update to 1.56.0.
       new  b077e3d   gnu: r-a4core: Update to 1.32.0.
       new  82de77d   gnu: r-a4classif: Update to 1.32.0.
       new  0b60916   gnu: r-a4preproc: Update to 1.32.0.
       new  e5a3654   gnu: r-a4reporting: Update to 1.32.0.
       new  ae1730a   gnu: r-a4base: Update to 1.32.0.
       new  1aaddde   gnu: r-a4: Update to 1.32.0.
       new  b7ddf0f   gnu: r-abseqr: Update to 1.2.0.
       new  e33c25f   gnu: r-bacon: Update to 1.12.0.
       new  a5860eb   gnu: r-rgadem: Update to 2.31.0.
       new  f7a495b   gnu: r-motiv: Update to 1.40.0.
       new  aa0ebfd   gnu: r-motifstack: Update to 1.28.0.
       new  19ee763   gnu: r-genomicscores: Update to 1.8.0.
       new  bcc233c   gnu: r-atacseqqc: Update to 1.8.0.
       new  bab06a6   gnu: r-gofuncr: Update to 1.4.0.
       new  e2e1dea   gnu: r-abaenrichment: Update to 1.14.0.
       new  69a2ec5   gnu: r-annotationfuncs: Update to 1.34.0.
       new  ee1a45d   gnu: r-annotationtools: Update to 1.58.0.
       new  9da2021   gnu: r-allelicimbalance: Update to 1.22.0.
       new  b68a9e8   gnu: r-aucell: Update to 1.6.0.
       new  2a6d838   gnu: r-ebimage: Update to 4.26.0.
       new  1269a92   gnu: r-yamss: Update to 1.10.0.
       new  128c6d5   gnu: r-gtrellis: Update to 1.16.0.
       new  3cdc5d1   gnu: r-somaticsignatures: Update to 2.20.0.
       new  edba69b   gnu: r-yapsa: Update to 1.10.0.
       new  56576be   gnu: r-gcrma: Update to 2.56.0.
       new  38c5d13   gnu: r-simpleaffy: Update to 2.60.0.
       new  f48e29d   gnu: r-yaqcaffy: Update to 1.44.0.
       new  2feea2d   gnu: r-quantro: Update to 1.18.0.
       new  7f4957b   gnu: r-yarn: Update to 1.10.0.
       new  0334b20   gnu: r-roar: Update to 1.20.0.
       new  88469de   gnu: r-xbseq: Update to 1.16.0.
       new  7c88813   gnu: r-massspecwavelet: Update to 1.50.0.
       new  298f7f1   gnu: r-xcms: Update to 3.6.0.
       new  07597c8   gnu: r-wrench: Update to 1.2.0.
       new  a6edf33   gnu: r-wiggleplotr: Update to 1.8.0.
       new  c881b9e   gnu: r-widgettools: Update to 1.62.0.
       new  67bc925   gnu: r-webbioc: Update to 1.56.0.
       new  02530c2   gnu: r-zfpkm: Update to 1.6.0.
       new  7d33d36   gnu: r-rbowtie2: Update to 1.6.0.
       new  c2bfb97   gnu: r-progeny: Update to 1.6.0.
       new  c24adbb   gnu: r-arrmnormalization: Update to 1.24.0.
       new  85c1d20   gnu: r-chippeakanno: Update to 3.18.0.

The 215 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 gnu/packages/bioconductor.scm   | 540 ++++++++++++++++++++++------------------
 gnu/packages/bioinformatics.scm | 425 +++++++++++++++----------------
 gnu/packages/cran.scm           | 240 +++++++++++++++++-
 gnu/packages/graph.scm          |   4 +-
 gnu/packages/statistics.scm     |   4 +-
 guix/build-system/r.scm         |   2 +-
 guix/import/cran.scm            |   4 +-
 7 files changed, 762 insertions(+), 457 deletions(-)

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