02/02: gnu: python-scanpy: Add python-louvain to inputs.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit b4a33870f6a4d1929967ae6f2de404517cd65b8d
Author: Ricardo Wurmus <address@hidden>
Date:   Tue Apr 2 15:10:51 2019 +0200

    gnu: python-scanpy: Add python-louvain to inputs.
    
    * gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort
    inputs and add python-louvain.
    [arguments]: Do not delete test that depends on louvain.
---
 gnu/packages/bioinformatics.scm | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8f6a37a..020d2d5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13301,9 +13301,6 @@ in RNA-seq data.")
              (delete-file-recursively "scanpy/tests/notebooks")
              (delete-file "scanpy/tests/test_clustering.py")
 
-             ;; TODO: No module named 'louvain'
-             (delete-file "scanpy/tests/test_rank_genes_groups_logreg.py")
-
              ;; TODO: I can't get the plotting tests to work, even with Xvfb.
              (delete-file "scanpy/tests/test_plotting.py")
              (delete-file "scanpy/tests/test_preprocessing.py")
@@ -13316,18 +13313,19 @@ in RNA-seq data.")
              #t)))))
     (propagated-inputs
      `(("python-anndata" ,python-anndata)
+       ("python-h5py" ,python-h5py)
        ("python-igraph" ,python-igraph)
-       ("python-numba" ,python-numba)
        ("python-joblib" ,python-joblib)
+       ("python-louvain" ,python-louvain)
+       ("python-matplotlib" ,python-matplotlib)
        ("python-natsort" ,python-natsort)
        ("python-networkx" ,python-networkx)
-       ("python-statsmodels" ,python-statsmodels)
-       ("python-scikit-learn" ,python-scikit-learn)
-       ("python-matplotlib" ,python-matplotlib)
+       ("python-numba" ,python-numba)
        ("python-pandas" ,python-pandas)
+       ("python-scikit-learn" ,python-scikit-learn)
        ("python-scipy" ,python-scipy)
        ("python-seaborn" ,python-seaborn)
-       ("python-h5py" ,python-h5py)
+       ("python-statsmodels" ,python-statsmodels)
        ("python-tables" ,python-tables)))
     (native-inputs
      `(("python-pytest" ,python-pytest)))