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11/14: gnu: Add r-roar.
From: |
guix-commits |
Subject: |
11/14: gnu: Add r-roar. |
Date: |
Sat, 30 Mar 2019 03:56:00 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a6e1eb1a96799212815eda7b0408d778b7000022
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 22:41:58 2019 +0100
gnu: Add r-roar.
* gnu/packages/bioconductor.scm (r-roar): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b0c1fb0..d87d913 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3914,3 +3914,32 @@ normalization. YARN leverages many Bioconductor tools
and statistical
techniques to account for the large heterogeneity and sparsity found in very
large RNA-seq experiments.")
(license license:artistic2.0)))
+
+(define-public r-roar
+ (package
+ (name "r-roar")
+ (version "1.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "roar" version))
+ (sha256
+ (base32
+ "15650s9vs7dvmqpvrs4xwn6j4kh14yqsx4daqyhhxxr68kn8mklw"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://github.com/vodkatad/roar/")
+ (synopsis "Identify differential APA usage from RNA-seq alignments")
+ (description
+ "This package provides tools for identifying preferential usage of APA
+sites, comparing two biological conditions, starting from known alternative
+sites and alignments obtained from standard RNA-seq experiments.")
+ (license license:gpl3)))
- branch master updated (bc91562 -> ec12e53), guix-commits, 2019/03/30
- 04/14: gnu: Add r-yapsa., guix-commits, 2019/03/30
- 03/14: gnu: Add r-somaticsignatures., guix-commits, 2019/03/30
- 05/14: gnu: Add r-gcrma., guix-commits, 2019/03/30
- 02/14: gnu: Add r-gtrellis., guix-commits, 2019/03/30
- 08/14: gnu: Add r-downloader., guix-commits, 2019/03/30
- 11/14: gnu: Add r-roar.,
guix-commits <=
- 07/14: gnu: Add r-yaqcaffy., guix-commits, 2019/03/30
- 01/14: gnu: Add r-pmcmr., guix-commits, 2019/03/30
- 10/14: gnu: Add r-yarn., guix-commits, 2019/03/30
- 06/14: gnu: Add r-simpleaffy., guix-commits, 2019/03/30
- 09/14: gnu: Add r-quantro., guix-commits, 2019/03/30
- 12/14: gnu: Add r-xbseq., guix-commits, 2019/03/30
- 13/14: gnu: Add r-massspecwavelet., guix-commits, 2019/03/30
- 14/14: gnu: Add r-xcms., guix-commits, 2019/03/30