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02/03: gnu: r-copynumber: Move to (gnu packages bioconductor).


From: guix-commits
Subject: 02/03: gnu: r-copynumber: Move to (gnu packages bioconductor).
Date: Wed, 6 Mar 2019 15:08:15 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 3d13b448e5e5a4eff7a94ca38ee051206daab96d
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:05:43 2019 +0100

    gnu: r-copynumber: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
    * gnu/packages/bioconductor.scm (r-copynumber): ...to here.
---
 gnu/packages/bioconductor.scm   | 23 +++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 23 -----------------------
 2 files changed, 23 insertions(+), 23 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4976509..bbfe68c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1204,6 +1204,29 @@ Viewer (SAV) files, access data, and generate QC plots.")
 sequencing data.")
     (license license:gpl2+)))
 
+(define-public r-copynumber
+  (package
+    (name "r-copynumber")
+    (version "1.22.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "copynumber" version))
+              (sha256
+               (base32
+                "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-s4vectors" ,r-s4vectors)
+       ("r-iranges" ,r-iranges)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-biocgenerics" ,r-biocgenerics)))
+    (home-page "https://bioconductor.org/packages/copynumber";)
+    (synopsis "Segmentation of single- and multi-track copy number data")
+    (description
+     "This package segments single- and multi-track copy number data by a
+penalized least squares regression method.")
+    (license license:artistic2.0)))
+
 (define-public r-dnacopy
   (package
     (name "r-dnacopy")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4481235..09d3bf2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6347,29 +6347,6 @@ between two different types of motif instances using as 
much relevant
 information as possible.")
     (license (list license:gpl2+ license:gpl3+))))
 
-(define-public r-copynumber
-  (package
-    (name "r-copynumber")
-    (version "1.22.0")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "copynumber" version))
-              (sha256
-               (base32
-                "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-s4vectors" ,r-s4vectors)
-       ("r-iranges" ,r-iranges)
-       ("r-genomicranges" ,r-genomicranges)
-       ("r-biocgenerics" ,r-biocgenerics)))
-    (home-page "https://bioconductor.org/packages/copynumber";)
-    (synopsis "Segmentation of single- and multi-track copy number data")
-    (description
-     "This package segments single- and multi-track copy number data by a
-penalized least squares regression method.")
-    (license license:artistic2.0)))
-
 (define-public r-geneplotter
   (package
     (name "r-geneplotter")



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