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02/03: gnu: r-annotate: Move to bioconductor.
From: |
guix-commits |
Subject: |
02/03: gnu: r-annotate: Move to bioconductor. |
Date: |
Sun, 13 Jan 2019 07:04:28 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 7097c7009deae1a1b4997e5222fd72b0c6c330f4
Author: Ricardo Wurmus <address@hidden>
Date: Sun Jan 13 12:55:46 2019 +0100
gnu: r-annotate: Move to bioconductor.
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
---
gnu/packages/bioconductor.scm | 29 ++++++++++++++++++++++++++++-
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 37ac941..22d8b53 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2019 Ricardo Wurmus <address@hidden>
-;;; Copyright © 2018 Roel Janssen <address@hidden>
+;;; Copyright © 2017, 2018 Roel Janssen <address@hidden>
;;; Copyright © 2018 Tobias Geerinckx-Rice <address@hidden>
;;;
;;; This file is part of GNU Guix.
@@ -228,6 +228,33 @@ database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
+(define-public r-annotate
+ (package
+ (name "r-annotate")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "annotate" version))
+ (sha256
+ (base32
+ "0p6c96lay23a67dyirgnwzm2yw22m592z780vy6p4nqwla8ha18n"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)
+ ("r-xtable" ,r-xtable)))
+ (home-page
+ "https://bioconductor.org/packages/annotate")
+ (synopsis "Annotation for microarrays")
+ (description "This package provides R environments for the annotation of
+microarrays.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package
(name "r-hpar")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 66785d0..4012b47 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6338,33 +6338,6 @@ between two different types of motif instances using as
much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
-(define-public r-annotate
- (package
- (name "r-annotate")
- (version "1.60.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "annotate" version))
- (sha256
- (base32
- "0p6c96lay23a67dyirgnwzm2yw22m592z780vy6p4nqwla8ha18n"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-dbi" ,r-dbi)
- ("r-rcurl" ,r-rcurl)
- ("r-xml" ,r-xml)
- ("r-xtable" ,r-xtable)))
- (home-page
- "https://bioconductor.org/packages/annotate")
- (synopsis "Annotation for microarrays")
- (description "This package provides R environments for the annotation of
-microarrays.")
- (license license:artistic2.0)))
-
(define-public r-copynumber
(package
(name "r-copynumber")