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branch master updated (ea600ff -> c6e9b49)
From: |
guix-commits |
Subject: |
branch master updated (ea600ff -> c6e9b49) |
Date: |
Sat, 12 Jan 2019 17:35:59 -0500 (EST) |
rekado pushed a change to branch master
in repository guix.
from ea600ff gnu: python-pillow: Update homepage.
new 7e634c2 refresh: Suggest input changes when updating.
new 91e0555 import: cran: Suggest input changes.
new a2315c6 gnu: r-jsonlite: Update to 1.6.
new 04a18a8 gnu: r-writexl: Update to 1.1.
new 48102ce gnu: r-mvabund: Update to 4.0.1.
new ef91530 gnu: r-readr: Update to 1.3.1.
new 646e1ef gnu: r-curl: Update to 3.3.
new 25c67ec gnu: Add r-generics.
new 813d9c5 gnu: r-broom: Update to 0.5.1.
new 2766d34 gnu: r-sjlabelled: Update to 1.0.16.
new 0e87bf0 gnu: r-processx: Update to 3.2.1.
new 44c69a5 gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
new 0aad198 gnu: r-pracma: Update to 2.2.2.
new b140569 gnu: r-readxl: Update to 1.2.0.
new 527c605 gnu: r-callr: Update to 3.1.1.
new 11a3654 gnu: r-argparse: Update to 2.0.0.
new 35cf487 gnu: r-survival: Update to 2.43-3.
new 3dbd87f gnu: r-class: Update to 7.3-15.
new 60f1bce gnu: r-codetools: Update to 0.2-16.
new ca2bc7e gnu: r-mgcv: Update to 1.8-26.
new b6e2767 gnu: r-pheatmap: Update to 1.0.12.
new eae93bd gnu: r-bh: Update to 1.69.0-1.
new bf3aded gnu: r-markdown: Update to 0.9.
new 495866a gnu: r-knitr: Update to 1.21.
new c668a95 gnu: r-rlang: Update to 0.3.1.
new f12ed36 gnu: r-tibble: Update to 2.0.0.
new 23347dc gnu: r-dbplyr: Update to 1.3.0.
new ca4861c gnu: r-backports: Update to 1.1.3.
new fe8c445 gnu: r-checkmate: Update to 1.9.0.
new 02c89c5 gnu: r-commonmark: Update to 1.7.
new c12e429 gnu: r-httr: Update to 1.4.0.
new 8f49d99 gnu: r-git2r: Update to 0.24.0.
new fb45934 gnu: r-rstudioapi: Update to 0.9.0.
new 54ebdf6 gnu: r-rmarkdown: Update to 1.11.
new 2c8594d gnu: r-sfsmisc: Update to 1.1-3.
new 7213ef0 gnu: r-rann: Update to 2.6.1.
new 70ee5ab gnu: r-cowplot: Update to 0.9.4.
new bcc17f7 gnu: r-rrcov: Update to 1.4-7.
new 9b7df80 gnu: r-rcppeigen: Update to 0.3.3.5.0.
new aa72d7f gnu: r-quantreg: Update to 5.38.
new 2e4fc4a gnu: r-caret: Update to 6.0-81.
new 0c025a7 gnu: r-clipr: Update to 0.5.0.
new 37349c7 gnu: r-httpuv: Update to 1.4.5.1.
new 1add168 gnu: r-htmltable: Update to 1.13.1.
new 69aad34 gnu: r-feather: Update to 0.3.2.
new dcf89cc gnu: r-haven: Update to 2.0.0.
new 422dea1 gnu: r-ps: Update to 1.3.0.
new 72c4987 gnu: r-circlize: Update to 0.4.5.
new 397dba0 gnu: r-powerlaw: Update to 0.70.2.
new 8f88701 gnu: r-lava: Update to 1.6.4.
new 77f9722 gnu: r-dimred: Add missing input.
new 5703991 gnu: r-recipes: Add missing input.
new 1c6d199 gnu: r-mitml: Update to 0.3-7.
new 221b3b1 gnu: r-rmysql: Update to 0.10.16.
new fc74de4 gnu: r-ddalpha: Update to 1.3.8.
new ed46a05 gnu: r-laeken: Update to 0.5.0.
new 111516f gnu: r-gclus: Update to 1.3.2.
new fc00a1f gnu: r-pillar: Update to 1.3.1.
new 7e9e9c9 gnu: r-tinytex: Update to 0.10.
new 9d83132 gnu: r-statnet-common: Update to 4.2.0.
new 7abb15f gnu: r-tseries: Update to 0.10-46.
new 5f1f110 gnu: r-cubature: Update to 2.0.3.
new f0fe1a5 gnu: r-shinyace: Update to 0.3.3.
new f2fc34f gnu: r-fnn: Update to 1.1.2.2.
new 962304c gnu: r-arules: Update to 1.6-2.
new 1417d5f gnu: r-rio: Update to 0.5.16.
new 1afe564 gnu: r-glmmtmb: Update to 0.2.3.
new 9df469a gnu: r-emmeans: Update to 1.3.1.
new 1b14440 gnu: r-sjstats: Update to 0.17.3.
new fbd263c gnu: r-abn: Update to 1.3.
new 12502bf gnu: r-prediction: Update to 0.3.6.1.
new f0867a0 gnu: r-findpython: Update to 1.0.4.
new 2652e25 gnu: r-refgenome: Update to 1.7.3.1.
new de7631b gnu: r-slam: Update to 0.1-44.
new 6eab52e gnu: r-ggeffects: Update to 0.8.0.
new 16d296b gnu: r-shades: Update to 1.3.1.
new 9ad5f4b gnu: r-grimport: Update to 0.9-1.1.
new e041740 gnu: r-chemometricswithr: Update to 0.1.13.
new 209e504 gnu: r-ontologyindex: Update to 2.5.
new c3e5b45 gnu: r-protviz: Update to 0.4.0.
new 3bc0667 gnu: r-bookdown: Update to 0.9.
new 80c4e75 gnu: r-seqminer: Update to 7.1.
new 5e8282a gnu: r-rmpi: Update to 0.6-9.
new e45f4a4 gnu: r-sjmisc: Update to 2.7.7.
new fd73016 gnu: r-sjplot: Update to 2.6.2.
new feb561f gnu: r-scran: Update to 1.10.2.
new f7e95c5 gnu: r-deseq2: Update to 1.22.2.
new ffe16ef gnu: r-dexseq: Update to 1.28.1.
new 3b8c884 gnu: r-rbgl: Update to 1.58.1.
new 9c1b2b2 gnu: r-systempiper: Update to 1.16.1.
new 00f105f gnu: r-biocviews: Update to 1.50.10.
new a619850 gnu: r-edger: Update to 3.24.3.
new 3fd4884 gnu: r-variantannotation: Update to 1.28.8.
new 52c977a gnu: r-limma: Update to 3.38.3.
new d4fc834 gnu: r-biocparallel: Update to 1.16.5.
new 1fa12b2 gnu: r-biostrings: Update to 2.50.2.
new 4bfde52 gnu: r-genomicalignments: Update to 1.18.1.
new 4c7b922 gnu: r-tximport: Update to 1.10.1.
new 86162c7 gnu: r-rhdf5: Update to 2.26.2.
new 5c72eba gnu: r-copywriter: Update to 2.14.1.
new c20426e gnu: r-methylkit: Update to 1.8.1.
new 46508c3 gnu: r-sva: Update to 3.30.1.
new a4f038d gnu: r-mzr: Update to 2.16.1.
new 6451af7 gnu: r-mzid: Update to 1.20.1.
new 880ed11 gnu: r-msnbase: Update to 2.8.3.
new 9abf344 gnu: r-msnid: Update to 1.16.1.
new 3bdc41b gnu: r-deseq: Update to 1.34.1.
new ab4a862 gnu: r-edaseq: Update to 2.16.3.
new 4615cf9 gnu: r-annotationhub: Update to 2.14.2.
new 15d89fe gnu: r-gage: Update to 2.32.1.
new 43931ff gnu: r-dirichletmultinomial: Update to 1.24.1.
new 27194ef gnu: r-ensembldb: Update to 2.6.3.
new c805959 gnu: r-biovizbase: Update to 1.30.1.
new 19cacb5 gnu: r-gviz: Update to 1.26.4.
new ad10b39 gnu: r-qvalue: Update to 2.14.1.
new 40561d0 gnu: r-hdf5array: Update to 1.10.1.
new a0224bd gnu: r-rhdf5lib: Update to 1.4.2.
new 0f268bb gnu: r-singlecellexperiment: Update to 1.4.1.
new 1e107b0 gnu: r-scater: Update to 1.10.1.
new c476edc gnu: r-rtracklayer: Update to 1.42.1.
new add2b19 gnu: r-chippeakanno: Update to 3.16.1.
new 7f2b1c4 gnu: r-goseq: Update to 1.34.1.
new 0b469ee gnu: r-glimma: Update to 1.10.1.
new 45dcd7d gnu: r-rots: Update to 1.10.1.
new cad6fb2 gnu: Add r-plgem.
new d220bab gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
new c86fc96 gnu: r-inspect: Update to 1.12.1.
new c6e9b49 gnu: r-ruvseq: Update to 1.16.1.
The 128 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 89 +++++++++++---
gnu/packages/bioinformatics.scm | 149 ++++++++++++------------
gnu/packages/cran.scm | 252 ++++++++++++++++++++++------------------
gnu/packages/maths.scm | 6 +-
gnu/packages/statistics.scm | 126 ++++++++++----------
guix/import/cran.scm | 29 +++--
guix/scripts/refresh.scm | 23 +++-
guix/upstream.scm | 90 ++++++++++++--
8 files changed, 477 insertions(+), 287 deletions(-)
- branch master updated (ea600ff -> c6e9b49),
guix-commits <=
- 03/128: gnu: r-jsonlite: Update to 1.6., guix-commits, 2019/01/12
- 04/128: gnu: r-writexl: Update to 1.1., guix-commits, 2019/01/12
- 10/128: gnu: r-sjlabelled: Update to 1.0.16., guix-commits, 2019/01/12
- 05/128: gnu: r-mvabund: Update to 4.0.1., guix-commits, 2019/01/12
- 02/128: import: cran: Suggest input changes., guix-commits, 2019/01/12
- 09/128: gnu: r-broom: Update to 0.5.1., guix-commits, 2019/01/12
- 01/128: refresh: Suggest input changes when updating., guix-commits, 2019/01/12
- 06/128: gnu: r-readr: Update to 1.3.1., guix-commits, 2019/01/12
- 21/128: gnu: r-pheatmap: Update to 1.0.12., guix-commits, 2019/01/12
- 17/128: gnu: r-survival: Update to 2.43-3., guix-commits, 2019/01/12