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branch core-updates updated (7d9d521 -> 79ee97a)
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From: |
Marius Bakke |
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Subject: |
branch core-updates updated (7d9d521 -> 79ee97a) |
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Date: |
Wed, 14 Nov 2018 15:30:48 -0500 (EST) |
mbakke pushed a change to branch core-updates
in repository guix.
from 7d9d521 gnu: aide: Provide libpcre.a and libz.a.
adds 8a587c8 gnu: Add r-savr.
adds 3a4c628 gnu: Add r-aggregation.
adds ff939ef gnu: Add r-h5.
adds a961ae4 gnu: Add r-destiny.
adds f338e48 gnu: Add r-rgl.
adds 213e72a gnu: Add r-multicool.
adds 4106e6a gnu: Add r-misc3d.
adds da256af gnu: Add r-ks.
adds cf383cf gnu: Add r-feature.
adds 06bc7b8 gnu: Add r-arm.
adds f87a18e gnu: r-rcpp: Update to 1.0.0.
adds fccb245 gnu: r-jomo: Update to 2.6-5.
adds 492ec49 gnu: r-tmb: Update to 1.7.15.
adds 5174f06 gnu: r-rgooglemaps: Update to 1.4.3.
adds 317f5a5 gnu: r-sn: Update to 1.5-3.
adds 77bea84 gnu: r-biocviews: Update to 1.50.5.
adds 88514b9 gnu: r-biostrings: Update to 2.50.1.
adds 03a4153 gnu: r-ensembldb: Update to 2.6.1.
adds 005ec8d gnu: f2fs-tools: Update to 1.11.0.
adds 8d9bb4b services: dovecot: Allow to set 'client-limit'.
adds be8dd4a services: dovecot: Allow to set 'process-limit'.
adds a7553a7 services: dovecot: Set correct default value for the
"auth" service.
adds e8b9aaf mtd-utils: Update to 2.0.2.
adds 95906ee gnu: guile-ics: Remove custom bootstrap phase.
adds 7453785 gnu: Add guile-email.
adds 2d900b0 gnu: Add guile-debbugs-next.
adds e3a4703 gnu: Add mumi.
adds 74c903e Add missing license import.
adds 79b8341 gnu: emacs-circe: Update to 2.10.
adds ca364e7 gnu: jalv-select: Fetch sources from git.
adds 57906fa gnu: portmidi-for-extempore: Fetch sources from git.
adds 78eff85 gnu: ams-lv2: Fetch sources from git.
adds b255365 gnu: lvtk: Fetch sources from git.
adds 917dc89 gnu: csound: Fetch sources from git.
adds 2ae2395 gnu: swh-plugins-lv2: Fetch sources from git.
adds 0b8db03 gnu: infamous-plugins: Fetch sources from git.
adds eca7729 gnu: rtmidi: Fetch sources from git.
adds 458baef gnu: rsound: Fetch sources from git.
adds 8e5995e gnu: xjackfreak: Fetch sources from git.
adds 4289a30 gnu: cuetools: Fetch sources from git.
adds b249ff5 gnu: dcadec: Fetch sources from git.
adds c2a2d36 gnu: cli-visualizer: Fetch sources from git.
adds a7fde1a gnu: cava: Fetch sources from git.
adds bed4eb3 gnu: gxtuner: Fetch sources from git.
adds 37ebc19 gnu: msgpack: Remove custom bootstrap phase.
adds bc1ff4a gnu-maintenance: ".sign" and ".asc" files no longer match
'release-file?'.
adds 5230dce gnu-maintenance: Base kernel.org updater on HTML
directory listings.
adds 30288ae gnu: mdadm: Update to 4.1.
adds a3b72a8 ci: Add procedures to access evaluations.
adds 9d46648 gnu: Add marisa.
adds 1a0363c gnu: Add opencc.
adds 2f96876 gnu: ibus: Indent code properly.
adds 78209a1 gnu: Add librime.
adds 1329f09 gnu: Add rime-data.
adds d5b23d2 gnu: Add ibus-rime.
adds 78e3d55 gnu: Add emacs-ivy-rich.
adds cdb4048 gnu: portaudio: Remove custom bootstrap phase.
adds 7db147e gnu: rtmidi: Remove custom bootstrap phase.
adds e17f867 gnu: wmbattery: Remove custom bootstrap phase.
adds f116e1f gnu: wmclock: Remove custom bootstrap phase.
adds 4cbbb16 gnu: nxbelld: Remove custom bootstrap phase.
adds fc43d6d gnu: address@hidden: Update to 4.4.163.
adds 62168a5 gnu: address@hidden: Update to 4.9.136.
adds e22842f gnu: address@hidden: Update to 4.14.80.
adds 3b14494 gnu: icecat: Update to 60.3.0-gnu1.
adds 717d29e gnu: icecat: Add more fixes from mozilla-esr60.
adds cab70d4 gnu: perl-autovivification: Update to 0.18.
adds 8637428 gnu: librime: Fetch sources from git.
adds 487e3f5 gnu: ibus-rime: Fetch sources from git.
adds 1410e17 gnu: pianobar: Fetch sources from git.
adds f626b71 gnu: mdbtools: Remove custom bootstrap phase.
adds f1f1ceb gnu: mdbtools: Fetch sources from git.
adds a49b532 gnu: lxsession: Remove custom bootstrap phase.
adds 974056c gnu: opendht: Fetch sources from git.
adds 5ad728e gnu: opendht: Remove custom bootstrap phase.
adds 34da5c3 gnu: guile-dsv: Remove custom bootstrap phase.
adds 2cabd29 gnu: guildhall: Remove custom bootstrap phase.
adds d212ed2 gnu: lrdf: Fetch sources from git.
adds a69cc70 gnu: lrdf: Replace bootstrap phase.
adds 4cd6ab1 gnu: libjaylink: Remove custom bootstrap phase.
adds 867d9de gnu: openocd: Use INVOKE.
adds fab4558 gnu: libtoxcore: Remove custom bootstrap phase.
adds d68a158 gnu: libgtextutils: Remove custom bootstrap phase.
adds 7a52d0e gnu: dotconf: Remove custom bootstrap phase.
adds 08bc7f2 gnu: dotconf: Fetch sources from git.
adds caa39e5 gnu: milkytracker: Fetch sources from git.
adds 3a0592a gnu: lmms: Fetch sources from git.
adds 234a182 gnu: clyrics: Fetch sources from git.
adds 3b9e941 gnu: schismtracker: Fetch sources from git.
adds 8865973 gnu: lilypond: Use INVOKE.
adds cbb6a15 gnu: schismtracker: Remove custom bootstrap phase.
adds 2fef54f gnu: hpcguix-web: Do not re-bootstrap.
adds 5cdbdc2 gnu: par2cmdline: Fetch sources from git.
adds 2286107 gnu: par2cmdline: Remove custom bootstrap phase.
adds 88f9fea gnu: inotify-tools: Fetch sources from git.
adds 4078bea gnu: inotify-tools: Remove custom bootstrap phase.
adds 3478945 gnu: minizip: Remove custom bootstrap phase.
adds 112fcaf gnu: libtar: Remove custom bootstrap phase.
adds 0633c77 gnu: xdelta: Fetch sources from git.
adds e5ff963 gnu: xdelta: Remove custom bootstrap phase.
adds bc74e9e gnu: scsh: Remove custom bootstrap phase.
adds 2b2ab39 gnu: libharu: Fetch sources from git.
adds 6f3dd09 gnu: libharu: Remove custom bootstrap phase.
adds 5a103bb gnu: libiax2: Remove custom bootstrap phase.
adds cd1f661 gnu: libiax2: Fetch sources from git.
adds 2b61cd3 gnu: cifs-utils: Remove autoreconf phase.
adds 9066424 gnu: privoxy: Remove custom bootstrap phase.
adds 902068b gnu: tiled: Fetch sources from git.
adds 4ad3786 gnu: Add python-precis-i18n.
adds a311f42 gnu: python-nbxmpp: Update to 0.6.8.
adds 992a496 gnu: gajim: Update to 1.1.0.
adds 60c5b44 gnu: gajim: Get the second 'wrap-program' phase to return
#t.
adds 37a350e gnu: gajim: Move python-docutils from inputs to
native-inputs.
adds 89c7894 gnu: faust-2: Update to 2.5.23.
adds 50ee7e9 gnu: gtk-doc: Use local docbook-xsl.
adds 0ead0b4 gnu: webkitgtk: Include documentation.
adds ec35067 gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].
adds e874f34 gnu: mumi: Update to 0.0.0-2.bfd96ce7.
adds aaf0e47 gnu: libtoxcore: Update to 0.0.0-2.bf69b54.
adds a509b18 gnu: address@hidden: Adjust to documentation output.
adds 7865c8c gnu: r-lme4: Update to 1.1-19.
adds 23dd886 gnu: r-rtsne: Update to 0.15.
adds 41d2c26 gnu: r-rcpparmadillo: Update to 0.9.200.4.0.
adds 441cf11 gnu: r-dplyr: Update to 0.7.8.
adds 2a4c587 gnu: r-ggpubr: Update to 0.1.9.
adds 06910a8 gnu: r-rcmdcheck: Update to 1.3.2.
adds 5f9b38b gnu: r-s4vectors: Update to 0.20.1.
adds 9c001c0 doc: Fix typo.
adds 6521631 guix package: '--show' errors when asked for a
non-existent package.
adds 6c84390 guix system: Invoking 'guix system init' twice keeps
timestamps zeroed.
adds 9a65a05 gnu: go: Update default to 1.11.
adds 0fd115d build-system/go: Plan removal of the pkg folder for
go-1.11 onward.
adds 46a37b5 gnu: go-github-com-prometheus-common-expfmt: Fix tests
for go-1.11.
adds d4780c8 gnu: go-github-com-audriusbutkevicius-cli: Fix tests for
go-1.11.
adds 66fa8f0 gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11.
adds 46a4ae2 gnu: go-github-com-wtolson-go-taglib: Fix tests and build
for go-1.11.
adds 5c47584 gnu: go-github-com-aarzilli-golua: Fix for go-1.11.
adds 53bcee9 gnu: vifm: Update to 0.10.
adds e740a90 gnu: youtube-dl: Update to 2018.11.07.
adds 9ed86fe tests: Add 'test-assertm' to (guix tests).
adds c6080c3 store: Add a functional object cache and use it in
'lower-object'.
adds 0dd60c1 gnu: php: Update to 7.2.12.
adds 7fed548 gnu: wine-staging: Update to 3.20.
adds 6018683 gnu: c-toxcore: Fetch sources from git.
adds 1559564 gnu: restic: Fix build phase.
adds 1afe198 nar: Access the database instead of connecting to the
daemon.
adds 1908777 services: mcron: Fix typo in comment.
adds d3f7517 services: nscd: Add 'invalidate' and 'statistics' actions.
adds 3ed56ad tests: Remove check for a feature that appeared in Guile
2.0.10.
adds 8390869 tests: Check file canonicalization for 'restore-file-set'.
adds f5a2724 deduplication: Restore directory mtime and permissions
after deduplication.
adds 3483f82 gnu: guix: Update to f5a2724.
adds 8263b9f gnu: certbot, python-acme: Update to 0.28.0.
adds 021bf6a gnu: Poppler: Fix CVE-2018-19149.
adds 978d597 gnu: direnv: Build with Go 1.9.
adds d540137 gnu: libssh: Fetch source over HTTPS.
adds c991806 gnu: ImageMagick: Update to 6.9.10-14.
adds 3f995aa gnu: spice-vdagent: Fix typo in desktop file.
adds 13a5746 gnu: r-genomeinfodbdata: Update to 1.2.0.
adds 13e70f6 gnu: r-go-db: Update to 3.7.0.
adds cb9e6ed gnu: r-genomationdata: Update to 1.14.0.
adds fc7683f gnu: r-org-hs-eg-db: Update to 3.7.0.
adds 76bd16b gnu: r-org-ce-eg-db: Update to 3.7.0.
adds 314511b gnu: r-org-dm-eg-db: Update to 3.7.0.
adds d34959b gnu: r-org-mm-eg-db: Update to 3.7.0.
adds 51b262f gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to
3.4.4.
adds 0bca864 gnu: Add jags.
adds 0c92f37 gnu: Add r-rjags.
adds 488dc4e gnu: Add r-abn.
adds ffdeda3 gnu: Add r-acd.
adds acbf23d gnu: Add r-acdm.
adds 08bf097 gnu: Add r-overlap.
adds 3cef715 gnu: Add r-circular.
adds 10483a6 gnu: Add r-activity.
adds e4f4a04 gnu: Add r-ouch.
adds ee66a13 gnu: Add jamm.
adds bac2974 gnu: feh: Update to 3.0.
adds d63f588 gnu: sudo: Update to 1.8.26.
adds 7939387 gnu: nano: Update to 3.2.
adds 24dd6ec gnu: mtools: Update to 4.0.20.
adds e921993 gnu: xf86-video-r128: Update to 6.12.0.
new 79ee97a Merge branch 'master' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/guix.texi | 47 +-
gnu/local.mk | 2 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/audio.scm | 192 +++---
gnu/packages/backup.scm | 19 +-
gnu/packages/bioconductor.scm | 61 ++
gnu/packages/bioinformatics.scm | 127 +++-
gnu/packages/compression.scm | 27 +-
gnu/packages/cran.scm | 451 +++++++++++++-
gnu/packages/crypto.scm | 53 +-
gnu/packages/databases.scm | 21 +-
gnu/packages/datastructures.scm | 24 +
gnu/packages/emacs.scm | 32 +-
gnu/packages/embedded.scm | 13 +-
gnu/packages/game-development.scm | 11 +-
gnu/packages/geo.scm | 4 +-
gnu/packages/gnustep.scm | 19 +-
gnu/packages/gnuzilla.scm | 78 +--
gnu/packages/golang.scm | 49 +-
gnu/packages/gtk.scm | 8 +-
gnu/packages/guile.scm | 74 ++-
gnu/packages/ibus.scm | 683 +++++++++++++++++-----
gnu/packages/image-viewers.scm | 4 +-
gnu/packages/imagemagick.scm | 5 +-
gnu/packages/linux.scm | 49 +-
gnu/packages/llvm.scm | 23 +-
gnu/packages/lxde.scm | 9 +-
gnu/packages/mail.scm | 52 +-
gnu/packages/messaging.scm | 62 +-
gnu/packages/mtools.scm | 6 +-
gnu/packages/music.scm | 126 ++--
gnu/packages/nano.scm | 4 +-
gnu/packages/package-management.scm | 6 +-
gnu/packages/patches/icecat-CVE-2018-12383.patch | 103 ----
gnu/packages/patches/poppler-CVE-2018-19149.patch | 80 +++
gnu/packages/pdf.scm | 34 +-
gnu/packages/php.scm | 9 +-
gnu/packages/python.scm | 19 +
gnu/packages/rdf.scm | 20 +-
gnu/packages/samba.scm | 5 +-
gnu/packages/serialization.scm | 8 -
gnu/packages/shells.scm | 7 +-
gnu/packages/shellutils.scm | 5 +-
gnu/packages/spice.scm | 2 +-
gnu/packages/ssh.scm | 8 +-
gnu/packages/statistics.scm | 50 +-
gnu/packages/syncthing.scm | 31 +-
gnu/packages/telephony.scm | 21 +-
gnu/packages/textutils.scm | 51 +-
gnu/packages/tls.scm | 6 +-
gnu/packages/tor.scm | 9 +-
gnu/packages/video.scm | 4 +-
gnu/packages/vim.scm | 4 +-
gnu/packages/web.scm | 6 +-
gnu/packages/webkit.scm | 46 +-
gnu/packages/wine.scm | 6 +-
gnu/packages/xdisorg.scm | 16 +-
gnu/packages/xorg.scm | 4 +-
gnu/services/base.scm | 54 +-
gnu/services/mail.scm | 51 +-
gnu/services/mcron.scm | 2 +-
gnu/tests/base.scm | 14 +
guix/build/go-build-system.scm | 3 +
guix/ci.scm | 74 ++-
guix/gexp.scm | 7 +-
guix/gnu-maintenance.scm | 115 +++-
guix/grafts.scm | 8 +-
guix/nar.scm | 13 +-
guix/scripts/package.scm | 10 +-
guix/scripts/system.scm | 7 +
guix/store.scm | 68 ++-
guix/store/database.scm | 6 +
guix/store/deduplication.scm | 12 +-
guix/tests.scm | 34 ++
tests/challenge.scm | 8 -
tests/debug-link.scm | 8 -
tests/gexp.scm | 5 -
tests/guix-package.sh | 4 +
tests/nar.scm | 47 +-
tests/profiles.scm | 11 -
tests/size.scm | 8 -
81 files changed, 2463 insertions(+), 1005 deletions(-)
delete mode 100644 gnu/packages/patches/icecat-CVE-2018-12383.patch
create mode 100644 gnu/packages/patches/poppler-CVE-2018-19149.patch
- branch core-updates updated (7d9d521 -> 79ee97a),
Marius Bakke <=