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01/02: talks: Add JCAD talk.
|
From: |
Ludovic Courtès |
|
Subject: |
01/02: talks: Add JCAD talk. |
|
Date: |
Wed, 24 Oct 2018 17:14:58 -0400 (EDT) |
civodul pushed a commit to branch master
in repository maintenance.
commit e07f789a0e670105b778738fa3abcc2b4269f996
Author: Ludovic Courtès <address@hidden>
Date: Wed Oct 24 10:34:12 2018 +0200
talks: Add JCAD talk.
---
.gitignore | 8 +
.../images/openhub-activity.png | Bin 19245 -> 51814 bytes
.../images/openhub-contributors.png | Bin 16103 -> 34239 bytes
.../images/2018-05-22-145713_2560x1440_scrot.png | Bin 0 -> 330901 bytes
talks/jcad-2018/images/Guix-horizontal-print.pdf | 1 +
.../images/IBM_Blue_Gene_P_supercomputer.jpg | Bin 0 -> 1793867 bytes
.../images/acm-artifact-review-and-badging.png | 1 +
.../images/acm-artifacts-evaluated-badge.png | 1 +
.../jcad-2018/images/acm-artifacts-functional.jpg | Bin 0 -> 367293 bytes
talks/jcad-2018/images/acm-results-replicated.jpg | Bin 0 -> 341212 bytes
talks/jcad-2018/images/arrow-curly.svg | 1 +
talks/jcad-2018/images/arrow.svg | 1 +
talks/jcad-2018/images/big-picture-1.pdf | 1 +
talks/jcad-2018/images/big-picture-2.pdf | 1 +
talks/jcad-2018/images/big-picture-3.pdf | 1 +
talks/jcad-2018/images/big-picture.svg | 388 ++++++++++++
talks/jcad-2018/images/cake.jpg | 1 +
talks/jcad-2018/images/docker-guix-lol.pdf | Bin 0 -> 13732 bytes
.../images/docker-image-layers-cropped.png | 1 +
talks/jcad-2018/images/easybuild-bug.png | 1 +
talks/jcad-2018/images/easybuild.png | 1 +
talks/jcad-2018/images/environment-modules.png | 1 +
talks/jcad-2018/images/guix-kernel-python.png | Bin 0 -> 43732 bytes
.../images/guixhpc-logo-transparent-white.pdf | 1 +
.../jcad-2018/images/guixhpc-logo-transparent.pdf | Bin 0 -> 8802 bytes
talks/jcad-2018/images/hwloc-graph.dot | 1 +
talks/jcad-2018/images/hwloc-graph.pdf | 1 +
talks/jcad-2018/images/hwloc-runtime-deps.dot | 1 +
talks/jcad-2018/images/hwloc-runtime-deps.pdf | 1 +
.../images/inria-logo-inverse-en-2017.pdf | 1 +
talks/jcad-2018/images/lwn-docker-hello-world.png | Bin 0 -> 475685 bytes
.../nature-reviewing-computational-methods.png | 1 +
talks/jcad-2018/images/nature-transparency.png | 1 +
talks/jcad-2018/images/openhub-activity.png | 1 +
talks/jcad-2018/images/openhub-contributors.png | 1 +
.../jcad-2018/images/package-managers-cropped.png | 1 +
talks/jcad-2018/images/pigx1.pdf | Bin 0 -> 129872 bytes
talks/jcad-2018/images/pigx1.svg | 645 ++++++++++++++++++++
talks/jcad-2018/images/pigx2.pdf | Bin 0 -> 115889 bytes
talks/jcad-2018/images/pigx2.svg | 1 +
.../images/rena-container-ship-wreck-nz.jpg | Bin 0 -> 96569 bytes
talks/jcad-2018/images/repeatability-study.png | Bin 0 -> 143166 bytes
talks/jcad-2018/images/rescience-logo.png | 1 +
talks/jcad-2018/images/rescience.png | Bin 0 -> 89453 bytes
talks/jcad-2018/images/shrink-wrap.jpg | 1 +
talks/jcad-2018/images/shrink-wrap2.png | 1 +
talks/jcad-2018/images/singularity-hpc-wire.png | 1 +
talks/jcad-2018/images/snap-crypto-miner.png | Bin 0 -> 151061 bytes
talks/jcad-2018/images/spack-bug.png | 1 +
talks/jcad-2018/images/spack.png | 1 +
talks/jcad-2018/images/swh-logo.gif | 1 +
talks/jcad-2018/images/swh-logo2.png | 1 +
talks/jcad-2018/images/transparency.jpg | Bin 0 -> 236575 bytes
talks/jcad-2018/images/workflow-management-3.pdf | 1 +
talks/jcad-2018/rules.ini | 9 +
talks/jcad-2018/talk.tex | 657 +++++++++++++++++++++
56 files changed, 1741 insertions(+)
diff --git a/.gitignore b/.gitignore
index d7bb9f9..226f5ac 100644
--- a/.gitignore
+++ b/.gitignore
@@ -144,3 +144,11 @@
/talks/fosdem-2018/hpc/talk.snm
/talks/fosdem-2018/hpc/talk.toc
/talks/fosdem-2018/hpc/talk.vrb
+/talks/jcad-2018/talk.aux
+/talks/jcad-2018/talk.log
+/talks/jcad-2018/talk.nav
+/talks/jcad-2018/talk.out
+/talks/jcad-2018/talk.pdf
+/talks/jcad-2018/talk.snm
+/talks/jcad-2018/talk.toc
+/talks/jcad-2018/talk.vrb
diff --git a/talks/inria-bordeaux-2016/images/openhub-activity.png
b/talks/inria-bordeaux-2016/images/openhub-activity.png
index f737e21..391de63 100644
Binary files a/talks/inria-bordeaux-2016/images/openhub-activity.png and
b/talks/inria-bordeaux-2016/images/openhub-activity.png differ
diff --git a/talks/inria-bordeaux-2016/images/openhub-contributors.png
b/talks/inria-bordeaux-2016/images/openhub-contributors.png
index 9e87963..34c5583 100644
Binary files a/talks/inria-bordeaux-2016/images/openhub-contributors.png and
b/talks/inria-bordeaux-2016/images/openhub-contributors.png differ
diff --git a/talks/jcad-2018/images/2018-05-22-145713_2560x1440_scrot.png
b/talks/jcad-2018/images/2018-05-22-145713_2560x1440_scrot.png
new file mode 100644
index 0000000..42e1f5f
Binary files /dev/null and
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diff --git a/talks/jcad-2018/images/Guix-horizontal-print.pdf
b/talks/jcad-2018/images/Guix-horizontal-print.pdf
new file mode 120000
index 0000000..2fa87eb
--- /dev/null
+++ b/talks/jcad-2018/images/Guix-horizontal-print.pdf
@@ -0,0 +1 @@
+../../bosc-2017/images/Guix-horizontal-print.pdf
\ No newline at end of file
diff --git a/talks/jcad-2018/images/IBM_Blue_Gene_P_supercomputer.jpg
b/talks/jcad-2018/images/IBM_Blue_Gene_P_supercomputer.jpg
new file mode 100644
index 0000000..983984c
Binary files /dev/null and
b/talks/jcad-2018/images/IBM_Blue_Gene_P_supercomputer.jpg differ
diff --git a/talks/jcad-2018/images/acm-artifact-review-and-badging.png
b/talks/jcad-2018/images/acm-artifact-review-and-badging.png
new file mode 120000
index 0000000..c958d1f
--- /dev/null
+++ b/talks/jcad-2018/images/acm-artifact-review-and-badging.png
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/acm-artifact-review-and-badging.png
\ No newline at end of file
diff --git a/talks/jcad-2018/images/acm-artifacts-evaluated-badge.png
b/talks/jcad-2018/images/acm-artifacts-evaluated-badge.png
new file mode 120000
index 0000000..f647cb5
--- /dev/null
+++ b/talks/jcad-2018/images/acm-artifacts-evaluated-badge.png
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/acm-artifacts-evaluated-badge.png
\ No newline at end of file
diff --git a/talks/jcad-2018/images/acm-artifacts-functional.jpg
b/talks/jcad-2018/images/acm-artifacts-functional.jpg
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index 0000000..1720c19
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diff --git a/talks/jcad-2018/images/acm-results-replicated.jpg
b/talks/jcad-2018/images/acm-results-replicated.jpg
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diff --git a/talks/jcad-2018/images/arrow-curly.svg
b/talks/jcad-2018/images/arrow-curly.svg
new file mode 120000
index 0000000..7cfe213
--- /dev/null
+++ b/talks/jcad-2018/images/arrow-curly.svg
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/arrow-curly.svg
\ No newline at end of file
diff --git a/talks/jcad-2018/images/arrow.svg b/talks/jcad-2018/images/arrow.svg
new file mode 120000
index 0000000..265cb07
--- /dev/null
+++ b/talks/jcad-2018/images/arrow.svg
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/arrow.svg
\ No newline at end of file
diff --git a/talks/jcad-2018/images/big-picture-1.pdf
b/talks/jcad-2018/images/big-picture-1.pdf
new file mode 120000
index 0000000..c35afd3
--- /dev/null
+++ b/talks/jcad-2018/images/big-picture-1.pdf
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/big-picture-1.pdf
\ No newline at end of file
diff --git a/talks/jcad-2018/images/big-picture-2.pdf
b/talks/jcad-2018/images/big-picture-2.pdf
new file mode 120000
index 0000000..c9b6648
--- /dev/null
+++ b/talks/jcad-2018/images/big-picture-2.pdf
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/big-picture-2.pdf
\ No newline at end of file
diff --git a/talks/jcad-2018/images/big-picture-3.pdf
b/talks/jcad-2018/images/big-picture-3.pdf
new file mode 120000
index 0000000..b8d0c4f
--- /dev/null
+++ b/talks/jcad-2018/images/big-picture-3.pdf
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/big-picture-3.pdf
\ No newline at end of file
diff --git a/talks/jcad-2018/images/big-picture.svg
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diff --git a/talks/jcad-2018/images/pigx2.pdf b/talks/jcad-2018/images/pigx2.pdf
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+++ b/talks/jcad-2018/images/pigx2.svg
@@ -0,0 +1 @@
+../../cern-2018/paper2.svg
\ No newline at end of file
diff --git a/talks/jcad-2018/images/rena-container-ship-wreck-nz.jpg
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diff --git a/talks/jcad-2018/images/rescience-logo.png
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+../../fosdem-2018/hpc/images/rescience-logo.png
\ No newline at end of file
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diff --git a/talks/jcad-2018/images/shrink-wrap.jpg
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+../../fosdem-2017/hpc/images/shrink-wrap.jpg
\ No newline at end of file
diff --git a/talks/jcad-2018/images/shrink-wrap2.png
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+++ b/talks/jcad-2018/images/shrink-wrap2.png
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+../../fosdem-2017/hpc/images/shrink-wrap2.png
\ No newline at end of file
diff --git a/talks/jcad-2018/images/singularity-hpc-wire.png
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new file mode 120000
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+../../inria-bordeaux-2016/images/singularity-hpc-wire.png
\ No newline at end of file
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+++ b/talks/jcad-2018/images/spack-bug.png
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+../../fosdem-2017/hpc/images/spack-bug.png
\ No newline at end of file
diff --git a/talks/jcad-2018/images/spack.png b/talks/jcad-2018/images/spack.png
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+++ b/talks/jcad-2018/images/spack.png
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+../../fosdem-2017/hpc/images/spack.png
\ No newline at end of file
diff --git a/talks/jcad-2018/images/swh-logo.gif
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\ No newline at end of file
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+../../fosdem-2018/hpc/images/swh-logo2.png
\ No newline at end of file
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diff --git a/talks/jcad-2018/images/workflow-management-3.pdf
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+++ b/talks/jcad-2018/images/workflow-management-3.pdf
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+../../fosdem-2018/hpc/images/workflow-management-3.pdf
\ No newline at end of file
diff --git a/talks/jcad-2018/rules.ini b/talks/jcad-2018/rules.ini
new file mode 100644
index 0000000..5a74423
--- /dev/null
+++ b/talks/jcad-2018/rules.ini
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+;; Rules for Rubber.
+
+[dot-pdf]
+target = (.*)\.pdf
+source = \1.dot
+rule = shell
+cost = 0
+command = dot -Tpdf -Gratio=.78 -o $target $source
+message = rendering $source into $target
diff --git a/talks/jcad-2018/talk.tex b/talks/jcad-2018/talk.tex
new file mode 100644
index 0000000..f514236
--- /dev/null
+++ b/talks/jcad-2018/talk.tex
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+% The comment below tells Rubber to compile the .dot files.
+%
+% rubber: module graphics
+% rubber: rules rules.ini
+
+\documentclass[aspectratio=169]{beamer}
+
+\usetheme{default}
+
+\usefonttheme{structurebold}
+\usepackage{helvet}
+\usecolortheme{seagull} % white on black
+
+\usepackage[utf8]{inputenc}
+\PassOptionsToPackage{hyphens}{url}\usepackage{hyperref,xspace,multicol}
+\usepackage[absolute,overlay]{textpos}
+\usepackage{tikz}
+\usetikzlibrary{arrows,shapes,trees,shadows,positioning}
+\usepackage{fancyvrb} % for '\Verb'
+\usepackage{xifthen} % for '\isempty'
+
+% Remember the position of every picture.
+\tikzstyle{every picture}+=[remember picture]
+
+\tikzset{onslide/.code args={<#1>#2}{%
+ \only<#1>{\pgfkeysalso{#2}} % \pgfkeysalso doesn't change the path
+}}
+
+% Colors.
+\definecolor{guixred1}{RGB}{226,0,38} % red P
+\definecolor{guixorange1}{RGB}{243,154,38} % guixorange P
+\definecolor{guixyellow}{RGB}{254,205,27} % guixyellow P
+\definecolor{guixred2}{RGB}{230,68,57} % red S
+\definecolor{guixred3}{RGB}{115,34,27} % dark red
+\definecolor{guixorange2}{RGB}{236,117,40} % guixorange S
+\definecolor{guixtaupe}{RGB}{134,113,127} % guixtaupe S
+\definecolor{guixgrey}{RGB}{91,94,111} % guixgrey S
+\definecolor{guixdarkgrey}{RGB}{46,47,55} % guixdarkgrey S
+\definecolor{guixblue1}{RGB}{38,109,131} % guixblue S
+\definecolor{guixblue2}{RGB}{10,50,80} % guixblue S
+\definecolor{guixgreen1}{RGB}{133,146,66} % guixgreen S
+\definecolor{guixgreen2}{RGB}{157,193,7} % guixgreen S
+
+\setbeamerfont{title}{size=\huge}
+\setbeamerfont{frametitle}{size=\huge}
+\setbeamerfont{normal text}{size=\Large}
+
+% White-on-black color theme.
+\setbeamercolor{structure}{fg=guixorange1,bg=black}
+\setbeamercolor{title}{fg=white,bg=black}
+\setbeamercolor{date}{fg=guixorange1,bg=black}
+\setbeamercolor{frametitle}{fg=white,bg=black}
+\setbeamercolor{titlelike}{fg=white,bg=black}
+\setbeamercolor{normal text}{fg=white,bg=black}
+\setbeamercolor{alerted text}{fg=guixyellow,bg=black}
+\setbeamercolor{section in toc}{fg=white,bg=black}
+\setbeamercolor{section in toc shaded}{fg=white,bg=black}
+\setbeamercolor{subsection in toc}{fg=guixorange1,bg=black}
+\setbeamercolor{subsection in toc shaded}{fg=white,bg=black}
+\setbeamercolor{subsubsection in toc}{fg=guixorange1,bg=black}
+\setbeamercolor{subsubsection in toc shaded}{fg=white,bg=black}
+\setbeamercolor{frametitle in toc}{fg=white,bg=black}
+\setbeamercolor{local structure}{fg=guixorange1,bg=black}
+
+\newcommand{\highlight}[1]{\alert{\textbf{#1}}}
+
+\title{Au-delà des conteneurs : \\
+ Environnements reproductibles \\
+ avec GNU Guix}
+
+\author{Ludovic Courtès}
+\date{\small{JCAD 2018, ENS Lyon}}
+
+\setbeamertemplate{navigation symbols}{} % remove the navigation bar
+
+\AtBeginSection[]{
+ \begin{frame}
+ \frametitle{}
+ \tableofcontents[currentsection]
+ \end{frame}
+}
+
+
+\newcommand{\screenshot}[2][width=\paperwidth]{
+ \begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+ {\includegraphics[{#1}]{#2}};
+ \end{tikzpicture}
+ \end{frame}
+}
+
+
+\begin{document}
+
+\begin{frame}[plain, fragile]
+ \vspace{10mm}
+ \titlepage
+
+ \vfill{}
+
\hfill{\includegraphics[width=0.2\paperwidth]{images/inria-logo-inverse-en-2017}}
+\end{frame}
+
+
+\setbeamercolor{normal text}{fg=black,bg=white}
+% http://www.nature.com/ngeo/journal/v7/n11/full/ngeo2294.html
+%% \screenshot{images/nature-transparency}
+
+% https://www.nature.com/nmeth/journal/v12/n12/full/nmeth.3686.html
+%% \screenshot{images/nature-reviewing-computational-methods}
+%
http://blogs.nature.com/methagora/2014/02/guidelines-for-algorithms-and-software-in-nature-methods.html
+
+% http://www.acm.org/publications/policies/artifact-review-badging
+%% \screenshot[height=\paperheight]{images/acm-artifact-review-and-badging}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]{
+ \includegraphics[height=.8\textheight]{images/acm-artifacts-functional}
+ };
+ \node [at=(current page.south), anchor=south,
+ text=guixdarkgrey, fill=white, text opacity=1]{
+
\small{\url{https://www.acm.org/publications/policies/artifact-review-badging}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]{
+ \includegraphics[height=.8\textheight]{images/rescience}
+ };
+ \node [at=(current page.south), anchor=south,
+ text=guixdarkgrey, fill=white, text opacity=1]{
+ \small{\url{https://rescience.github.io/}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]{
+ \includegraphics[width=.9\textwidth]{images/repeatability-study}
+ };
+ \node [at=(current page.south east), anchor=south east,
+ text=guixdarkgrey, fill=white, text opacity=1]{
+ \small{\url{http://reproducibility.cs.arizona.edu/}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \includegraphics[width=\textwidth]{images/big-picture-1}
+\end{frame}
+\begin{frame}[plain]
+ \includegraphics[width=\textwidth]{images/big-picture-2}
+\end{frame}
+\begin{frame}[plain]
+ \includegraphics[width=\textwidth]{images/big-picture-3}
+\end{frame}
+\setbeamercolor{normal text}{fg=white,bg=black}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+
{\includegraphics[width=\paperwidth]{images/IBM_Blue_Gene_P_supercomputer}};
+
+ \node[at=(current page.center), rounded corners=4, text centered,
+ inner sep=3mm, opacity=.75, text opacity=1]{
+ \Huge{\textbf{HPC = cutting edge?}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+%% \setbeamercolor{normal text}{bg=guixblue2}
+%% \begin{frame}
+%% \Huge{\textbf{Recipe for a contemporary HPC cluster environment.}}
+%% \end{frame}
+%% \setbeamercolor{normal text}{fg=white,bg=black}
+
+\setbeamercolor{normal text}{fg=black,bg=white}
+\screenshot{images/environment-modules}
+\setbeamercolor{normal text}{fg=white,bg=black}
+
+%% \setbeamercolor{normal text}{bg=white}
+%% \screenshot[width=0.9\paperwidth]{images/package-managers-cropped}
+
+%% \begin{frame}[plain]
+%% \begin{tikzpicture}[remember picture, overlay]
+%% \node [at=(current page.center), inner sep=0pt]
+%%
{\includegraphics[height=\paperheight]{images/universal_install_script}};
+%% \node [at=(current page.north east), anchor=south east, rotate=90,
+%% text=black, text opacity=1, fill=white, opacity=.6]{
+%% \url{http://xkcd.com/1654/}
+%% };
+%% \end{tikzpicture}
+%% \end{frame}
+
+%% \setbeamercolor{normal text}{bg=guixblue2}
+%% \begin{frame}
+%% \Huge{\textbf{Fixing HPC cluster environments.}}
+%% \end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \begin{tikzpicture}[overlay]
+ \node [at=(current page.center), anchor=south,
+ fill=white, text width=\paperwidth, text centered,
+ text height=0.5\paperheight]
+ {\includegraphics[width=0.5\paperwidth]{images/easybuild}};
+
+ %
https://github.com/LLNL/spack/blob/develop/share/spack/logo/spack-logo-text-64.png
+ %
https://github.com/LLNL/spack/blob/develop/share/spack/logo/spack-logo-white-text-48.png
+ \node [at=(current page.center), anchor=north,
+ fill=white, text width=\paperwidth, text centered,
+ inner sep=0.2\paperheight]
+ {\includegraphics[width=0.4\paperwidth]{images/spack}};
+ \end{tikzpicture}
+\end{frame}
+
+\screenshot[width=\paperwidth]{images/easybuild-bug}
+%% \screenshot[width=\paperwidth]{images/spack-bug}
+
+\setbeamercolor{normal text}{bg=guixdarkgrey}
+\begin{frame}[plain]
+ \Huge{\textbf{Approach \#2:\\``Preserve the mess''.}}
+ \\[0.5cm]
+ \hfill{\large{-- Arnaud Legrand (Inria reproducibility WG)}}
+\end{frame}
+\setbeamercolor{normal text}{bg=black}
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+
{\includegraphics[height=\paperheight]{images/docker-image-layers-cropped}};
+ \node [at=(current page.north east), anchor=north east,
+ text=black, text opacity=1, fill=white, opacity=.6]{
+ \url{https://imagelayers.io/}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+
{\includegraphics[width=0.95\paperwidth]{images/singularity-hpc-wire}};
+ \node [at=(current page.south east), anchor=south east,
+ text=black, text opacity=1, fill=white]{
+
\small{\url{https://www.hpcwire.com/2016/10/20/singularity-containers-easing-scientific-computing}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[fragile]
+ \begin{tikzpicture}[overlay]
+ \node [at=(current page.center)]
+ {\includegraphics[width=0.7\textwidth]{images/shrink-wrap}};
+ \node<2> [at=(current page.east), anchor=east]
+ {\includegraphics[width=0.4\textwidth]{images/shrink-wrap2}};
+ \end{tikzpicture}
+\end{frame}
+
+% https://xkcd.com/1988/
+
+%% \screenshot[width=\paperwidth]{images/rena-container-ship-wreck-nz}
+
+\setbeamercolor{normal text}{bg=white,fg=guixorange1}
+\begin{frame}[fragile]
+ \begin{tikzpicture}[overlay]
+ \node(logo) [at=(current page.center), inner sep=0pt]
+
{\includegraphics[width=\textwidth]{images/guixhpc-logo-transparent-white}};
+ %% \node [at=(logo.south), anchor=north, text=black, inner sep=10pt]
+ %% {\Large{\textbf{Reproducible software deployment\\for
high-performance computing.}}};
+ \node [at=(current page.south), anchor=south, text=guixdarkgrey, inner
sep=20pt]
+ {\Large{\url{https://guix-hpc.bordeaux.inria.fr}}};
+ \end{tikzpicture}
+\end{frame}
+\setbeamercolor{normal text}{fg=white,bg=black}
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+%% \begin{frame}
+%% \LARGE{
+%% \begin{enumerate}
+%% \item transactional package manager
+%% \item software environment manager
+%% \item APIs \& tools to customize environments
+%% \item container provisioning tools
+%% \end{enumerate}
+%% }
+%% \end{frame}
+
+\begin{frame}
+ \Large{
+ \begin{itemize}
+ \item started in 2012
+ \item \highlight{8,300+ packages}, all free software
+ \item \highlight{4 architectures}:\\
+ x86\_64, i686, ARMv7, AArch64
+ \item binaries available
+ \item \highlight{Guix-HPC effort (Inria, MDC, UBC) started in 2017}
+ \end{itemize}
+ }
+\end{frame}
+
+\begin{frame}{cluster deployments}
+ \Large{
+ \begin{itemize}
+ % http://zvfak.blogspot.ch/2015/07/gnu-guix-for-easily-managing.html
+ \item \highlight{Max Delbrück Center} (DE): 250-node cluster +
+ workstations
+ % https://ubc.uu.nl/infrastructure/
+ % https://wiki.bioinformatics.umcutrecht.nl/pub/HPC/WebHome/HPC_Flyer.png
+ \item \highlight{UMC Utrecht} (NL): 68-node cluster (1,000+ cores)
+ %
https://www.qriscloud.org.au/support/qriscloud-documentation/75-euramoo-datasheet
+ %
https://www.qriscloud.org.au/support/qriscloud-documentation/76-flashlite-datasheet
+ \item \highlight{University of Queensland} (AU): 20-node cluster
+ (900 cores)
+ \item \highlight{PlaFRIM} (FR): Inria Bordeaux (3,000+ cores)
+ \end{itemize}
+ }
+\end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+%% \screenshot[width=.9\paperwidth]{images/openhub-activity}
+\screenshot[width=.9\paperwidth]{images/openhub-contributors}
+\setbeamercolor{normal text}{bg=black}
+
+
+\begin{frame}[fragile]
+
+ \begin{semiverbatim}
+ \LARGE{
+guix package \alert{-i} gcc-toolchain openmpi hwloc
+
+eval `guix package \alert{--search-paths}=prefix`
+
+guix package \alert{--roll-back}
+
+guix package \alert{--profile}=./experiment \\
+ -i address@hidden address@hidden
+}
+ \end{semiverbatim}
+\end{frame}
+
+\begin{frame}[fragile]
+ \begin{semiverbatim}
+ \LARGE{
+guix package \alert{--manifest}=my-packages.scm
+
+
+
+ (\alert{specifications->manifest}
+ '("gcc-toolchain" "openmpi"
+ "scotch" "mumps"))
+}
+ \end{semiverbatim}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixdarkgrey}
+\begin{frame}[fragile]
+ \begin{semiverbatim}
+ \Large{
address@hidden guix package \alert{--manifest}=my-packages.scm
address@hidden guix \alert{describe}
+ guix cabba9e
+ repository URL: https://git.sv.gnu.org/git/guix.git
+ commit: cabba9e15900d20927c1f69c6c87d7d2a62040fe
+
+\pause
+
+
address@hidden guix \alert{pull} --commit=cabba9e
address@hidden guix package \alert{--manifest}=my-packages.scm
+}
+ \end{semiverbatim}
+
+ \begin{tikzpicture}[overlay]
+ \node<3>[rounded corners=4, text centered, anchor=north,
+ fill=guixorange1, text width=7cm,
+ inner sep=3mm, opacity=.75, text opacity=1]
+ at (current page.center) {
+ \textbf{\Large{bit-reproducible \& portable!}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixblue2}
+\begin{frame}[fragile]%{``Virtual environments''}
+ \LARGE{
+ \begin{semiverbatim}
+\$ git clone https://\textrm{...}/petsc
+\$ cd petsc
+\$ guix \alert{environment} petsc
+[env]\$ ./configure && make
+ \end{semiverbatim}
+ }
+\end{frame}
+
+\begin{frame}[fragile]%{``Virtual environments''}
+ \LARGE{
+ \begin{semiverbatim}
+\$ guix \alert{environment} --ad-hoc \\
+ python python-numpy python-scipy \\
+ -- python3
+ \end{semiverbatim}
+ }
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixred3}
+\begin{frame}[fragile]%{Container provisioning}
+ \LARGE{
+ \begin{semiverbatim}
+\$ guix \alert{pack}\only<2>{ --relocatable}\only<3>{
--format=squashfs}\only<4->{ --format=docker} \\
+ jupyter jupyter-guile-kernel
+\textrm{...}
+/gnu/store/\textrm{...}-\only<1-2>{pack.tar.gz}\only<3>{singularity-image.tar.gz}\only<4->{docker-image.tar.gz}
+ \end{semiverbatim}
+ }
+\end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+\screenshot[width=.9\paperwidth]{images/docker-guix-lol}
+
+\setbeamercolor{normal text}{bg=guixdarkgrey}
+\begin{frame}[fragile]
+ \begin{semiverbatim}
+\LARGE{
+guix pack hwloc \\
+ \alert{--with-source}=./hwloc-2.1rc1.tar.gz
+
+
+guix package -i mumps \\
+ \alert{--with-input}=scotch=pt-scotch
+}
+ \end{semiverbatim}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixblue2}
+\begin{frame}[plain]
+ \Huge{\textbf{Reproducible deployment is key.}}
+\end{frame}
+\setbeamercolor{normal text}{fg=white,bg=black}
+
+\screenshot{images/pigx1}
+\screenshot{images/pigx2}
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]{
+ \includegraphics[height=.7\textheight]{images/workflow-management-3}
+ };
+ \node [at=(current page.south), anchor=south,
+ text=guixdarkgrey, fill=white, text opacity=1]{
+ \small{\url{https://www.guixwl.org/}}
+ };
+ \node [at=(current page.north west), anchor=north west, opacity=0,
+ inner sep=5mm, text=guixdarkgrey, fill=white, text opacity=1]{
+ \Large{\textbf{Guix Workflow Language}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]{
+ \includegraphics[width=.95\textwidth]{images/guix-kernel-python}
+ };
+ \node [at=(current page.south), anchor=south,
+ text=guixdarkgrey, fill=white, text opacity=1]{
+ \small{\url{https://gitlab.inria.fr/guix-hpc/guix-kernel/}}
+ };
+ \node [at=(current page.north west), anchor=north west, opacity=0,
+ inner sep=5mm, text=guixdarkgrey, fill=white, text opacity=1]{
+ \Large{\textbf{Jupyter + Guix (WIP!)}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixblue2}
+\begin{frame}[plain]
+ \Huge{\textbf{Wrap-up.}}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+\screenshot[width=\textwidth]{images/big-picture-3}
+
+\setbeamercolor{normal text}{fg=white,bg=black}
+\begin{frame}
+ \LARGE{
+ \begin{itemize}
+ \item \highlight{reproduce} software environments
+ \item \highlight{declare \& publish} complete environments
+ \item beyond replication: precision \highlight{experimentation}
+ \item a foundation for \highlight{``deployment-aware'' apps}
+ \end{itemize}
+ }
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixred3}
+\begin{frame}[plain]
+ \Huge{
+ Scientists, developers,\\
+ \& sysadmins:
+ \alert{let's talk!}
+ }
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\setbeamercolor{normal text}{bg=black}
+\begin{frame}[plain]
+
+\vfill{
+ \vspace{3cm}
+
\center{\includegraphics[width=0.5\textwidth]{images/guixhpc-logo-transparent}}\\[1.0cm]
+ address@hidden |} @GuixHPC
+ \center{\alert{\url{https://guix-hpc.bordeaux.inria.fr}}}
+ \\[1cm]
+}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=guixred2}
+\begin{frame}
+ \Huge{\textbf{Bonus slides!}}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=black}
+\begin{frame}[fragile]
+ %% \frametitle{Bit-Reproducible Builds$^*$}
+ %% \framesubtitle{$^*$ almost!}
+
+ \begin{semiverbatim}
+\Large{
+\$ guix build hwloc
+\uncover<2->{/gnu/store/\tikz[baseline]{\node[anchor=base](nixhash){\alert<2>{h2g4sf72\textrm{...}}};}-hwloc-1.11.2}
+
+\uncover<3->{\$ \alert<3>{guix gc --references
/gnu/store/\textrm{...}-hwloc-1.11.2}
+/gnu/store/\textrm{...}-glibc-2.24
+/gnu/store/\textrm{...}-gcc-4.9.3-lib
+/gnu/store/\textrm{...}-hwloc-1.11.2
+}}
+ \end{semiverbatim}
+
+ \begin{tikzpicture}[overlay]
+ \node<1>(labelnixhash) [fill=white, text=black, inner sep=0.5cm,
+ rounded corners] at (current page.center) {%
+ \Large{\textbf{isolated build}: chroot, separate name spaces, etc.}
+ };
+
+ \node<2>(labelnixhash) [fill=white, text=black] at (4cm, 2cm) {%
+ hash of \textbf{all} the dependencies};
+ \path[->]<2>(labelnixhash.north) edge [bend left, in=180, out=-45]
(nixhash.south);
+
+ \draw<4-> (-10pt, 105pt) [very thick, color=guixorange2, rounded
corners=8pt]
+ arc (10:-50:-50pt and 110pt);
+ \node<4->[fill=white, text=black, text opacity=1, opacity=.7,
+ rounded corners=2mm, inner sep=5mm]
+ at (7, 2) {\textbf{\Large{(nearly) bit-identical for everyone}}};
+ \end{tikzpicture}
+
+\end{frame}
+
+\begin{frame}[fragile]
+ \begin{tikzpicture}[overlay]
+ % https://www.digitaldealer.com/wp-content/uploads/2014/01/transparency.jpg
+ \node [at=(current page.center), inner sep=0pt]
+ {\includegraphics[width=\paperwidth]{images/transparency}};
+ \node[at=(current page.center), anchor=east, rounded corners=4, text
centered,
+ inner sep=3mm, opacity=.75, text opacity=1, color=purple]{
+ \Huge{\textbf{transparency?}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+ {\includegraphics[width=0.95\paperwidth]{images/snap-crypto-miner}};
+ \node [at=(current page.south east), anchor=south east,
+ text=black, text opacity=1, fill=white]{
+
\small{\url{https://github.com/canonical-websites/snapcraft.io/issues/651}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+
{\includegraphics[width=0.9\paperwidth]{images/lwn-docker-hello-world}};
+ \node [at=(current page.south east), anchor=south east,
+ text=white, fill=black, text opacity=1]{
+ \small{\url{https://lwn.net/Articles/752982/}}
+ };
+ \end{tikzpicture}
+\end{frame}
+
+
+
+\setbeamercolor{normal text}{bg=white}
+\begin{frame}[plain]
+ \begin{tikzpicture}[remember picture, overlay]
+ \node [at=(current page.center), inner sep=0pt]
+ {\includegraphics[height=\paperheight]{images/hwloc-graph}};
+ \end{tikzpicture}
+\end{frame}
+\setbeamercolor{normal text}{fg=white,bg=black}
+
+
+
+\begin{frame}{}
+
+ \begin{textblock}{12}(2, 8)
+ \tiny{
+ Copyright \copyright{} 2010, 2012--2018 Ludovic Courtès address@hidden
+ GNU Guix logo, CC-BY-SA 4.0, \url{http://gnu.org/s/guix/graphics}
+ Hand-drawn arrows by Freepik from flaticon.com
+
+ Copyright of other images included in this document is held by
+ their respective owners.
+ \\[3.0mm]
+ This work is licensed under the \alert{Creative Commons
+ Attribution-Share Alike 3.0} License. To view a copy of this
+ license, visit
+ \url{http://creativecommons.org/licenses/by-sa/3.0/} or send a
+ letter to Creative Commons, 171 Second Street, Suite 300, San
+ Francisco, California, 94105, USA.
+ \\[2.0mm]
+ At your option, you may instead copy, distribute and/or modify
+ this document under the terms of the \alert{GNU Free Documentation
+ License, Version 1.3 or any later version} published by the Free
+ Software Foundation; with no Invariant Sections, no Front-Cover
+ Texts, and no Back-Cover Texts. A copy of the license is
+ available at \url{http://www.gnu.org/licenses/gfdl.html}.
+ \\[2.0mm]
+ % Give a link to the 'Transparent Copy', as per Section 3 of the GFDL.
+ The source of this document is available from
+ \url{http://git.sv.gnu.org/cgit/guix/maintenance.git}.
+ }
+ \end{textblock}
+\end{frame}
+
+\end{document}
+
+% Local Variables:
+% coding: utf-8
+% comment-start: "%"
+% comment-end: ""
+% ispell-local-dictionary: "francais"
+% compile-command: "rubber --pdf talk.tex"
+% End:
+
+%% LocalWords: Reproducibility