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01/01: gnu: pigx-scrnaseq: Update to 0.0.6.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: pigx-scrnaseq: Update to 0.0.6. |
Date: |
Wed, 4 Jul 2018 18:52:40 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 08d1a8b1381db3851330031e1309892a28345029
Author: Ricardo Wurmus <address@hidden>
Date: Thu Jul 5 00:50:28 2018 +0200
gnu: pigx-scrnaseq: Update to 0.0.6.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
---
gnu/packages/bioinformatics.scm | 16 +++-------------
1 file changed, 3 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f2c4608..853aa75 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13027,7 +13027,7 @@ methylation and segmentation.")
(define-public pigx-scrnaseq
(package
(name "pigx-scrnaseq")
- (version "0.0.5")
+ (version "0.0.6")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
@@ -13035,24 +13035,14 @@ methylation and segmentation.")
"/pigx_scrnaseq-" version ".tar.gz"))
(sha256
(base32
- "0a73rilv0vnw42d5rsdq205h4f0x8j3jqv998janh4s324c6w2kj"))))
+ "0fvdymnka598z2ka7zk6rwrf9dq89p5lyd2y9swvyg72hn1jwjai"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "PICARDJAR=" (assoc-ref %build-inputs
"java-picard")
"/share/java/picard.jar")
(string-append "DROPSEQJAR=" (assoc-ref %build-inputs
"dropseq-tools")
- "/share/java/dropseq.jar"))
- #:phases
- (modify-phases %standard-phases
- (add-after 'install 'wrap-executable
- ;; Make sure the executable finds all R modules.
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (wrap-program (string-append out "/bin/pigx-scrnaseq")
- `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
- `("PYTHONPATH" ":" = (,(getenv "PYTHONPATH")))))
- #t)))))
+ "/share/java/dropseq.jar"))))
(inputs
`(("coreutils" ,coreutils)
("perl" ,perl)