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109/112: gnu: r-scran: Update to 1.8.2.
From: |
Ricardo Wurmus |
Subject: |
109/112: gnu: r-scran: Update to 1.8.2. |
Date: |
Sat, 2 Jun 2018 07:40:29 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d7e3299987b2b08f06b545b3032f52f0a3421bc1
Author: Ricardo Wurmus <address@hidden>
Date: Sat Jun 2 13:35:20 2018 +0200
gnu: r-scran: Update to 1.8.2.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and
r-delayedarray.
---
gnu/packages/bioinformatics.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fb4a8c8..e947750 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10888,19 +10888,21 @@ quality control.")
(define-public r-scran
(package
(name "r-scran")
- (version "1.6.9")
+ (version "1.8.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scran" version))
(sha256
(base32
- "0cs64cnf0xjcgmawr210y99j3gxs6aqgh8081n9827kkqnx2y5dm"))))
+ "0nbn5x75gf9d0p18w7vpkbv30cpdqvp5bz8xvila0h7jla7xdyih"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dt" ,r-dt)
("r-dynamictreecut" ,r-dynamictreecut)
("r-edger" ,r-edger)
@@ -10917,8 +10919,7 @@ quality control.")
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-statmod" ,r-statmod)
("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-viridis" ,r-viridis)
- ("r-zoo" ,r-zoo)))
+ ("r-viridis" ,r-viridis)))
(home-page "https://bioconductor.org/packages/scran")
(synopsis "Methods for single-cell RNA-Seq data analysis")
(description "This package implements a variety of low-level analyses of
- 92/112: gnu: r-ggbio: Update to 1.28.0., (continued)
- 92/112: gnu: r-ggbio: Update to 1.28.0., Ricardo Wurmus, 2018/06/02
- 94/112: gnu: r-snpstats: Update to 1.30.0., Ricardo Wurmus, 2018/06/02
- 96/112: gnu: r-ldblock: Update to 1.10.0., Ricardo Wurmus, 2018/06/02
- 102/112: gnu: r-hitc: Update to 1.24.0., Ricardo Wurmus, 2018/06/02
- 97/112: gnu: r-gqtlstats: Update to 1.12.0., Ricardo Wurmus, 2018/06/02
- 105/112: gnu: r-rhdf5lib: Update to 1.2.1., Ricardo Wurmus, 2018/06/02
- 83/112: gnu: r-fastseg: Update to 1.26.0., Ricardo Wurmus, 2018/06/02
- 101/112: gnu: r-fithic: Update to 1.6.0., Ricardo Wurmus, 2018/06/02
- 99/112: gnu: r-gwascat: Update to 2.12.0., Ricardo Wurmus, 2018/06/02
- 107/112: gnu: r-singlecellexperiment: Update to 1.2.0., Ricardo Wurmus, 2018/06/02
- 109/112: gnu: r-scran: Update to 1.8.2.,
Ricardo Wurmus <=
- 63/112: gnu: r-rhdf5: Update to 2.24.0., Ricardo Wurmus, 2018/06/02
- 69/112: gnu: r-protgenerics: Update to 1.12.0., Ricardo Wurmus, 2018/06/02
- 77/112: gnu: r-msnid: Update to 1.14.0., Ricardo Wurmus, 2018/06/02
- 79/112: gnu: r-deseq: Update to 1.32.0., Ricardo Wurmus, 2018/06/02
- 80/112: gnu: r-edaseq: Update to 2.14.0., Ricardo Wurmus, 2018/06/02
- 76/112: gnu: r-msnbase: Update to 2.6.1., Ricardo Wurmus, 2018/06/02
- 86/112: gnu: r-genomicfiles: Update to 1.16.0., Ricardo Wurmus, 2018/06/02
- 89/112: gnu: r-ensembldb: Update to 2.4.1., Ricardo Wurmus, 2018/06/02
- 91/112: gnu: r-biovizbase: Update to 1.28.0., Ricardo Wurmus, 2018/06/02
- 98/112: gnu: r-gviz: Update to 1.24.0., Ricardo Wurmus, 2018/06/02