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05/07: gnu: Add r-singlecellexperiment.
From: |
Ricardo Wurmus |
Subject: |
05/07: gnu: Add r-singlecellexperiment. |
Date: |
Mon, 12 Feb 2018 09:29:51 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 6fb1dc17a3898eb04178235d86aa0da480523d34
Author: Ricardo Wurmus <address@hidden>
Date: Mon Feb 12 15:19:11 2018 +0100
gnu: Add r-singlecellexperiment.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a5a4abb..912769e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10511,6 +10511,33 @@ variety of commonly used matrix types, including
sparse and HDF5-backed
matrices.")
(license license:gpl3)))
+(define-public r-singlecellexperiment
+ (package
+ (name "r-singlecellexperiment")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "SingleCellExperiment" version))
+ (sha256
+ (base32
+ "1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"))))
+ (properties
+ `((upstream-name . "SingleCellExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/SingleCellExperiment")
+ (synopsis "S4 classes for single cell data")
+ (description "This package defines an S4 class for storing data from
+single-cell experiments. This includes specialized methods to store and
+retrieve spike-in information, dimensionality reduction coordinates and size
+factors for each cell, along with the usual metadata for genes and
+libraries.")
+ (license license:gpl3)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
- branch master updated (ecae16b -> 7f1d9be), Ricardo Wurmus, 2018/02/12
- 01/07: gnu: hdf5: Build with -fPIC., Ricardo Wurmus, 2018/02/12
- 04/07: gnu: Add r-beachmat., Ricardo Wurmus, 2018/02/12
- 07/07: gnu: Add r-scran., Ricardo Wurmus, 2018/02/12
- 03/07: gnu: Add r-rhdf5lib., Ricardo Wurmus, 2018/02/12
- 05/07: gnu: Add r-singlecellexperiment.,
Ricardo Wurmus <=
- 02/07: gnu: Add r-shinydashboard., Ricardo Wurmus, 2018/02/12
- 06/07: gnu: Add r-scater., Ricardo Wurmus, 2018/02/12