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20/30: gnu: Add r-gwascat.
From: |
Ricardo Wurmus |
Subject: |
20/30: gnu: Add r-gwascat. |
Date: |
Tue, 7 Nov 2017 17:32:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 17:19:25 2017 +0100
gnu: Add r-gwascat.
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
---
gnu/packages/bioinformatics.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 90892f1..6ca40c5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10080,6 +10080,46 @@ grid graphics package. This results in genomic
information plotted together
with your data.")
(license license:artistic2.0)))
+(define-public r-gwascat
+ (package
+ (name "r-gwascat")
+ (version "2.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gwascat" version))
+ (sha256
+ (base32
+ "0n5x5i5v6a8wpn5mxmlpkl34b4kyypmymiwww6g61zch7xqrgywi"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationhub" ,r-annotationhub)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggbio" ,r-ggbio)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gqtlstats" ,r-gqtlstats)
+ ("r-graph" ,r-graph)
+ ("r-gviz" ,r-gviz)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-snpstats" ,r-snpstats)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/gwascat")
+ (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
+ (description
+ "This package provides tools for representing and modeling data in the
+EMBL-EBI GWAS catalog.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 24/30: gnu: Add r-fithic., (continued)
- 24/30: gnu: Add r-fithic., Ricardo Wurmus, 2017/11/07
- 25/30: gnu: Add r-hitc., Ricardo Wurmus, 2017/11/07
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
- 14/30: gnu: Add r-erma., Ricardo Wurmus, 2017/11/07
- 17/30: gnu: Add r-hardyweinberg., Ricardo Wurmus, 2017/11/07
- 21/30: gnu: Add r-sm., Ricardo Wurmus, 2017/11/07
- 30/30: gnu: Add glusterfs., Ricardo Wurmus, 2017/11/07
- 27/30: gnu: Add r-bbmle., Ricardo Wurmus, 2017/11/07
- 28/30: gnu: r-fdrtool: Update description., Ricardo Wurmus, 2017/11/07
- 22/30: gnu: Add r-vioplot., Ricardo Wurmus, 2017/11/07
- 20/30: gnu: Add r-gwascat.,
Ricardo Wurmus <=