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11/30: gnu: Add r-snpstats.
From: |
Ricardo Wurmus |
Subject: |
11/30: gnu: Add r-snpstats. |
Date: |
Tue, 7 Nov 2017 17:32:57 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit dd5fc8b78ec5e1bcef35eae409c8faa9b88b6aa3
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 15:43:53 2017 +0100
gnu: Add r-snpstats.
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2200842..a08f06a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9827,6 +9827,33 @@ of @dfn{quantitative trait loci} (QTL) archives, such as
eQTL, mQTL, dsQTL,
and more.")
(license license:artistic2.0)))
+(define-public r-snpstats
+ (package
+ (name "r-snpstats")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "snpStats" version))
+ (sha256
+ (base32
+ "1x9qwynh2hwl24vq02naf4mchpch7xi2pkdrlgw896k28kx0lvir"))))
+ (properties `((upstream-name . "snpStats")))
+ (build-system r-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-matrix" ,r-matrix)
+ ("r-survival" ,r-survival)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (home-page "https://bioconductor.org/packages/snpStats")
+ (synopsis "Methods for SNP association studies")
+ (description
+ "This package provides classes and statistical methods for large
address@hidden polymorphism} (SNP) association studies. This extends
+the earlier snpMatrix package, allowing for uncertainty in genotypes.")
+ (license license:gpl3)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- branch master updated (cd21587 -> 12a24ee), Ricardo Wurmus, 2017/11/07
- 02/30: gnu: Add r-complexheatmap., Ricardo Wurmus, 2017/11/07
- 04/30: gnu: Add r-annotationfilter., Ricardo Wurmus, 2017/11/07
- 01/30: gnu: Add r-genomicfiles., Ricardo Wurmus, 2017/11/07
- 03/30: gnu: Add r-dirichletmultinomial., Ricardo Wurmus, 2017/11/07
- 06/30: gnu: Add r-organismdbi., Ricardo Wurmus, 2017/11/07
- 05/30: gnu: Add r-ensembldb., Ricardo Wurmus, 2017/11/07
- 07/30: gnu: Add r-biovizbase., Ricardo Wurmus, 2017/11/07
- 10/30: gnu: Add r-gqtlbase., Ricardo Wurmus, 2017/11/07
- 11/30: gnu: Add r-snpstats.,
Ricardo Wurmus <=
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07