branch master updated (89618fa -> 9ecc4c6)

[Ricardo Wurmus]

rekado pushed a change to branch master
in repository guix.

      from  89618fa   build: Conditionally build json importer.
       new  6b46b04   import: utils: Add string helpers.
       new  84dfdc5   import: cran: Add support for Bioconductor 3.6.
       new  27baf50   import: cran: Use Bioconductor 3.6 helpers.
       new  25e51b1   guix: Add archive support for bioconductor-uri.
       new  8ca2b2b   gnu: r-rgraphviz: Update to 2.22.0.
       new  a40a04f   gnu: Add r-stringdist.
       new  7373b41   gnu: r-bioccheck: Update to 1.14.0.
       new  c7782c3   gnu: r-biocviews: Update to 1.46.0.
       new  94fd86e   gnu: r-dnacopy: Update to 1.52.0.
       new  2d4e887   gnu: r-annotate: Update to 1.56.0.
       new  cb4d3ff   gnu: r-geneplotter: Update to 1.56.0.
       new  554fac7   gnu: r-genefilter: Update to 1.60.0.
       new  0166dc0   gnu: r-deseq2: Update to 1.18.0.
       new  3fd010f   gnu: r-dexseq: Update to 1.24.0.
       new  727706a   gnu: r-annotationforge: Update to 1.20.0.
       new  c25154e   gnu: r-rbgl: Update to 1.54.0.
       new  1d0263b   gnu: r-rhtslib: Update to 1.10.0.
       new  5c18470   gnu: r-zlibbioc: Update to 1.24.0.
       new  da153b7   gnu: r-bamsignals: Update to 1.10.0.
       new  19e8929   gnu: r-tximport: Update to 1.6.0.
       new  e6b332d   gnu: r-rhdf5: Update to 2.22.0.
       new  598dacf   gnu: r-annotationfilter: Update to 1.2.0.
       new  c126ba6   gnu: r-copywriter: Update to 2.10.0.
       new  91e1867   gnu: r-methylkit: Update to 1.4.0.
       new  fad7c0c   gnu: r-sva: Update to 3.26.0.
       new  9f52e53   gnu: r-gseabase: Update to 1.40.0.
       new  b537552   gnu: r-systempiper: Update to 1.12.0.
       new  843826e   gnu: r-shortread: Update to 1.36.0.
       new  704fe4d   gnu: r-grohmm: Update to 1.12.0.
       new  d61fc4e   gnu: r-biocgenerics: Update to 0.24.0.
       new  3241461   gnu: r-biocinstaller: Update to 1.28.0.
       new  2167eaf   gnu: r-biocstyle: Update to 2.6.0.
       new  41f0f94   gnu: r-s4vectors: Update to 0.16.0.
       new  9e482c2   gnu: r-iranges: Update to 2.12.0.
       new  8aab023   gnu: r-genomeinfodb: Update to 1.14.0.
       new  7f1bac3   gnu: r-variantannotation: Update to 1.24.0.
       new  f642c0e   gnu: r-limma: Update to 3.34.0.
       new  2b6ae8b   gnu: r-xvector: Update to 0.18.0.
       new  aa5c1f6   gnu: r-genomicranges: Update to 1.30.0.
       new  ca52123   gnu: r-biobase: Update to 2.38.0.
       new  0f8d98f   gnu: r-annotationdbi: Update to 1.40.0.
       new  b719435   gnu: r-biostrings: Update to 2.46.0.
       new  f806841   gnu: r-rsamtools: Update to 1.30.0.
       new  cb0a9a7   gnu: r-delayedarray: Update to 0.4.1.
       new  6fcbed7   gnu: r-summarizedexperiment: Update to 1.8.0.
       new  96fb465   gnu: r-genomicalignments: Update to 1.14.0.
       new  aeb7387   gnu: r-graph: Update to 1.56.0.
       new  d13a3fe   gnu: r-topgo: Update to 2.30.0.
       new  e67850b   gnu: r-bsgenome: Update to 1.46.0.
       new  0f948b1   gnu: r-seqpattern: Update to 1.10.0.
       new  e6ce4bf   gnu: r-impute: Update to 1.52.0.
       new  e127c91   gnu: r-genomation: Update to 1.10.0.
       new  6177008   gnu: r-seqlogo: Update to 1.44.0.
       new  9a665df   gnu: r-protgenerics: Update to 1.10.0.
       new  dad5f83   gnu: r-affy: Update to 1.56.0.
       new  8a8138d   gnu: r-affyio: Update to 1.48.0.
       new  a998c9a   gnu: r-pcamethods: Update to 1.70.0.
       new  531e809   gnu: r-aroma-light: Update to 3.8.0.
       new  8140f68   gnu: r-deseq: Update to 1.30.0.
       new  22752be   gnu: r-msnid: Update to 1.11.0.
       new  0096127   gnu: r-edaseq: Update to 2.12.0.
       new  1567c8d   gnu: r-interactivedisplaybase: Update to 1.16.0.
       new  87fa5af   gnu: r-fastseq: Update to 1.24.0.
       new  98791c2   gnu: r-qvalue: Update to 2.10.0.
       new  ce59d62   gnu: r-motifrg: Update to 1.22.0.
       new  007424b   gnu: r-motifrg: Rename input label.
       new  1be0f53   gnu: r-vsn: Update to 3.46.0.
       new  aced057   gnu: r-rlang: Update to 0.1.4.
       new  ecfe98a   gnu: r-openssl: Update to 0.9.8.
       new  e7f680f   gnu: r-r-utils: Update to 2.6.0.
       new  689edf1   gnu: r-preprocesscore: Update to 1.40.0.
       new  65a8cd6   gnu: r-lubridate: Update to 1.7.1.
       new  2404cc4   gnu: r-category: Update to 2.44.0.
       new  eb3f5cc   gnu: r-gostats: Update to 2.44.0.
       new  010ab2f   gnu: r-edger: Update to 3.20.1.
       new  42e11d3   gnu: r-biomart: Update to 2.34.0.
       new  a044c7f   gnu: r-biocparallel: Update to 1.12.0.
       new  4dd469e   gnu: r-rtracklayer: Update to 1.38.0.
       new  74248d2   gnu: Add r-rmysql.
       new  158b674   gnu: r-genomicfeatures: Update to 1.30.0.
       new  eeaa696   gnu: r-chipseq: Update to 1.28.0.
       new  b500dbc   gnu: r-mzid: Update to 1.16.0.
       new  34b9675   gnu: r-mzr: Update to 2.12.0.
       new  15ca195   gnu: r-mzr: Remove bundled copy of boost.
       new  14b3c71   gnu: r-annotationhub: Update to 2.10.0.
       new  39d9098   gnu: r-mutationalpatterns: Update to 1.4.0.
       new  baa00ee   gnu: r-msnbase: Update to 2.4.0.
       new  60ec9da   gnu: r-tidyselect: Update to 0.2.3.
       new  9ecc4c6   gnu: r-servr: Update to 0.8.

The 89 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioinformatics.scm | 342 +++++++++++++++++++++-------------------
 gnu/packages/cran.scm           |  24 +++
 gnu/packages/databases.scm      |  31 ++++
 gnu/packages/graph.scm          |   4 +-
 gnu/packages/statistics.scm     |  27 ++--
 gnu/packages/web.scm            |   4 +-
 guix/build-system/r.scm         |   9 +-
 guix/import/cran.scm            |  91 ++++++++---
 guix/import/utils.scm           |  28 +++-
 9 files changed, 354 insertions(+), 206 deletions(-)