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01/01: gnu: python-scipy: Use 'modify-phases' syntax.
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From: |
Marius Bakke |
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Subject: |
01/01: gnu: python-scipy: Use 'modify-phases' syntax. |
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Date: |
Thu, 19 Jan 2017 16:03:51 +0000 (UTC) |
mbakke pushed a commit to branch python-tests
in repository guix.
commit 16ca6aaac867862ea6d84c5888bfc59099f335a0
Author: Marius Bakke <address@hidden>
Date: Thu Jan 19 16:59:28 2017 +0100
gnu: python-scipy: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-scipy)[arguments]: Use 'modify-phases'.
---
gnu/packages/python.scm | 104 +++++++++++++++++++++++------------------------
1 file changed, 50 insertions(+), 54 deletions(-)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 80d03f6..6d1a04c 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -3946,13 +3946,18 @@ functions.")
(outputs '("out" "doc"))
(arguments
`(#:phases
- (alist-cons-before
- 'build 'configure-openblas
- (lambda* (#:key inputs #:allow-other-keys)
- (call-with-output-file "site.cfg"
- (lambda (port)
- (format port
- "[blas]
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "scipy/integrate/tests/test_quadpack.py"
+ (("libm.so") "libm.so.6"))
+ #t)
+ (add-before 'build 'configure-openblas
+ (lambda* (#:key inputs #:allow-other-keys)
+ (call-with-output-file "site.cfg"
+ (lambda (port)
+ (format port
+ "[blas]
libraries = openblas
library_dirs = ~a/lib
include_dirs = ~a/include
@@ -3962,53 +3967,44 @@ include_dirs = ~a/include
library_dirs = ~a/lib
atlas_libs = openblas
"
- (assoc-ref inputs "openblas")
- (assoc-ref inputs "openblas")
- (assoc-ref inputs "openblas"))))
- #t)
- (alist-cons-after
- 'install 'install-doc
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
- (doc (string-append data "/doc/" ,name "-" ,version))
- (html (string-append doc "/html"))
- (pyver ,(string-append "PYVER=")))
- ;; Make installed package available for building the
- ;; documentation
- (add-installed-pythonpath inputs outputs)
- (with-directory-excursion "doc"
- ;; Fix generation of images for mathematical expressions.
- (substitute* (find-files "source" "conf\\.py")
- (("pngmath_use_preview = True")
- "pngmath_use_preview = False"))
- (mkdir-p html)
- (system* "make" "html" pyver)
- (system* "make" "latex" "PAPER=a4" pyver)
- (system* "make" "-C" "build/latex" "all-pdf" "PAPER=a4" pyver)
- (copy-file "build/latex/scipy-ref.pdf"
- (string-append doc "/scipy-ref.pdf"))
- (with-directory-excursion "build/html"
- (for-each (lambda (file)
- (let* ((dir (dirname file))
- (tgt-dir (string-append html "/" dir)))
- (install-file file html)))
- (find-files "." ".*"))))))
- ;; Tests can only be run after the library has been installed and not
- ;; within the source directory.
- (alist-cons-after
- 'install 'check
- (lambda _
- (with-directory-excursion "/tmp"
- (zero? (system* "python" "-c" "import scipy; scipy.test()"))))
- (alist-delete
- 'check
- (alist-cons-after
- 'unpack 'fix-tests
- (lambda _
- (substitute* "scipy/integrate/tests/test_quadpack.py"
- (("libm.so") "libm.so.6"))
- #t)
- %standard-phases)))))))
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "openblas"))))
+ #t)
+ (delete 'check)
+ (add-after 'install 'install-doc
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
+ (doc (string-append data "/doc/" ,name "-" ,version))
+ (html (string-append doc "/html"))
+ (pyver ,(string-append "PYVER=")))
+ ;; Make installed package available for building the
+ ;; documentation
+ (add-installed-pythonpath inputs outputs)
+ (with-directory-excursion "doc"
+ ;; Fix generation of images for mathematical expressions.
+ (substitute* (find-files "source" "conf\\.py")
+ (("pngmath_use_preview = True")
+ "pngmath_use_preview = False"))
+ (mkdir-p html)
+ (system* "make" "html" pyver)
+ (system* "make" "latex" "PAPER=a4" pyver)
+ (system* "make" "-C" "build/latex" "all-pdf" "PAPER=a4"
pyver)
+ (copy-file "build/latex/scipy-ref.pdf"
+ (string-append doc "/scipy-ref.pdf"))
+ (with-directory-excursion "build/html"
+ (for-each (lambda (file)
+ (let* ((dir (dirname file))
+ (tgt-dir (string-append html "/" dir)))
+ (install-file file html)))
+ (find-files "." ".*"))))
+ #t)))
+ (add-after 'install-doc 'check
+ (lambda _
+ ;; Tests can only be run after the library has been installed
and not
+ ;; within the source directory.
+ (with-directory-excursion "/tmp"
+ (zero? (system* "python" "-c" "import scipy;
scipy.test()"))))))))))
(home-page "http://www.scipy.org/";)
(synopsis "The Scipy library provides efficient numerical routines")
(description "The SciPy library is one of the core packages that make up