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01/02: gnu: Add r-variantannotation.
From: |
Leo Famulari |
Subject: |
01/02: gnu: Add r-variantannotation. |
Date: |
Wed, 06 Apr 2016 21:51:31 +0000 |
lfam pushed a commit to branch master
in repository guix.
commit b669d9c4c8ee4158f6122e29d807e0f9b2cd73c5
Author: Roel Janssen <address@hidden>
Date: Wed Mar 30 15:03:56 2016 +0200
gnu: Add r-variantannotation.
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.
Signed-off-by: Leo Famulari <address@hidden>
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 files changed, 32 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0afc0a6..a2cd29b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4036,6 +4036,38 @@ translation between different chromosome sequence naming
conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
+(define-public r-variantannotation
+ (package
+ (name "r-variantannotation")
+ (version "1.16.4")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "VariantAnnotation" version))
+ (sha256
+ (base32
+ "1z42j3p9b8h725inq8n0230llsdbav3gwcxy1nliypzfkxbzahsb"))))
+ (properties
+ `((upstream-name . "VariantAnnotation")))
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-dbi" ,r-dbi)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/VariantAnnotation")
+ (synopsis "Package for annotation of genetic variants")
+ (description "This R package can annotate variants, compute amino acid
+coding changes and predict coding outcomes.")
+ (license license:artistic2.0)))
+
(define-public r-xvector
(package
(name "r-xvector")