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01/01: gnu: Add Biopython.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add Biopython. |
Date: |
Mon, 20 Apr 2015 13:23:38 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 85c37e29a47b3c01db014fdbffc8f45905628903
Author: Ricardo Wurmus <address@hidden>
Date: Wed Apr 15 17:46:35 2015 +0200
gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 files changed, 33 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b125822..551da4e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -185,6 +185,39 @@ pybedtools extends BEDTools by offering feature-level
manipulations from with
Python.")
(license license:gpl2+)))
+(define-public python-biopython
+ (package
+ (name "python-biopython")
+ (version "1.65")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://biopython.org/DIST/biopython-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://biopython.org/")
+ (synopsis "Tools for biological computation in Python")
+ (description
+ "Biopython is a set of tools for biological computation including parsers
+for bioinformatics files into Python data structures; interfaces to common
+bioinformatics programs; a standard sequence class and tools for performing
+common operations on them; code to perform data classification; code for
+dealing with alignments; code making it easy to split up parallelizable tasks
+into separate processes; and more.")
+ (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))))
+
+(define-public python2-biopython
+ (package (inherit (package-with-python2 python-biopython))
+ (inputs
+ `(("python2-numpy" ,python2-numpy)))))
+
(define-public bowtie
(package
(name "bowtie")