[Gsrc-commit] trunk r8623: update bcftools to 1.16

[Carl Hansen]

------------------------------------------------------------
revno: 8623
revision-id: carlhansen1234@gmail.com-20221004180355-w0dbc8f32z4v016t
parent: carlhansen1234@gmail.com-20221004172537-f5s8swr2xxy8x9du
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2022-10-04 11:03:55 -0700
message:
  update bcftools to 1.16
modified:
  pkg/bio/bcftools/Makefile      makefile-20211027035004-c4quco8a79mnagtx-3
  pkg/bio/bcftools/sha256sums    sha256sums-20211027035004-c4quco8a79mnagtx-4

=== modified file 'pkg/bio/bcftools/Makefile'
--- a/pkg/bio/bcftools/Makefile 2021-10-27 07:04:10 +0000
+++ b/pkg/bio/bcftools/Makefile 2022-10-04 18:03:55 +0000
@@ -1,4 +1,4 @@
-# Copyright ©2021 Carl Hansen <carlhansen@gnu.org>
+# Copyright ©2021,2022 Carl Hansen <carlhansen@gnu.org>
 #
 # This file is part of BioSRC and GSRC.  the GNU Source Release Collection.
 # http://www.gnu.org/software/gsrc
@@ -21,7 +21,7 @@
 
 NAME = bcftools
 GARNAME = bcftools
-GARVERSION = 1.14
+GARVERSION = 1.16
 HOME_URL = http://https://www.htslib.org/download/
 DESCRIPTION = BCFtools, utilities that manipulate variant calls in the Variant 
Call Format (VCF) 
 define BLURB
@@ -37,7 +37,8 @@
 MASTER_SITES = $(MASTER_GITHUB)
 MASTER_SUBDIR = samtools/$(GARNAME)/releases/download/$(GARVERSION)/
 DISTFILES = $(DISTNAME).tar.bz2
-#BUILD_SCRIPTS = $(WORKSRC)/Makefile
+
+BUILD_SCRIPTS = $(WORKSRC)/Makefile
 #INSTALL_SCRIPTS = $(WORKSRC)/Makefile lib headers #programs lib headers man
 
 BUILDDEPS =
@@ -47,11 +48,17 @@
 
 include ../../../gar/gar.lib/auto.mk
 include config.mk
+
 export DESTDIR= $(packageprefix)/packages/$(PACKAGENAME)
 
+configure:
+       cd $(WORKOBJ) && ../$(WORKSRC)/configure
+       $(MAKECOOKIE)
+
 pre-install: build
        mkdir -p $(packageprefix)/packages/$(PACKAGENAME)
        mkdir -p $(prefix)/packages/$(PACKAGENAME)
+       $(MAKECOOKIE)
 
 
 #INSTALL_ARGS += prefix=$(packageprefix)

=== modified file 'pkg/bio/bcftools/sha256sums'
--- a/pkg/bio/bcftools/sha256sums       2021-10-27 07:04:10 +0000
+++ b/pkg/bio/bcftools/sha256sums       2022-10-04 18:03:55 +0000
@@ -1,1 +1,1 @@
-b7ef88ae89fcb55658c5bea2e8cb8e756b055e13860036d6be13756782aa19cb  
download/bcftools-1.14.tar.bz2
+90bf647c9ad79e10a243b8058c873de057fd7012e250d5ae6574839787a2ecd6  
download/bcftools-1.16.tar.bz2